Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07400

Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
1,559,683	+				-0.9
1,559,703	-				-2.2
1,559,716	+				+0.7
1,559,718	-				-1.3
1,559,749	+				+0.6
1,559,803	-				-2.5
1,559,803	-				+0.1
1,560,047	-				-0.6
1,560,065	-				-0.5
1,560,084	-				-0.3
1,560,122	+		BWI76_RS07395	0.13	+0.7
1,560,227	-		BWI76_RS07395	0.30	-0.3
1,560,331	+		BWI76_RS07395	0.46	+0.4
1,560,331	+		BWI76_RS07395	0.46	+0.7
1,560,335	+		BWI76_RS07395	0.47	+0.7
1,560,339	-		BWI76_RS07395	0.47	-1.6
1,560,345	+		BWI76_RS07395	0.48	-1.5
1,560,345	+		BWI76_RS07395	0.48	-3.0
1,560,391	+		BWI76_RS07395	0.56	+0.7
1,560,391	+		BWI76_RS07395	0.56	-1.3
1,560,399	+		BWI76_RS07395	0.57	-0.9
1,560,399	+		BWI76_RS07395	0.57	-1.2
1,560,409	+		BWI76_RS07395	0.58	+0.2
1,560,417	-		BWI76_RS07395	0.60	+0.7
1,560,417	-		BWI76_RS07395	0.60	+0.4
1,560,417	-		BWI76_RS07395	0.60	+1.7
1,560,471	+		BWI76_RS07395	0.68	+1.2
1,560,471	+		BWI76_RS07395	0.68	-0.3
1,560,479	-		BWI76_RS07395	0.69	-1.3
1,560,480	+		BWI76_RS07395	0.70	-1.1
1,560,480	+		BWI76_RS07395	0.70	-0.4
1,560,480	+		BWI76_RS07395	0.70	-1.3
1,560,480	+		BWI76_RS07395	0.70	-2.1
1,560,480	+		BWI76_RS07395	0.70	-0.1
1,560,480	+		BWI76_RS07395	0.70	+0.3
1,560,480	+		BWI76_RS07395	0.70	-1.4
1,560,480	+		BWI76_RS07395	0.70	-0.0
1,560,480	+		BWI76_RS07395	0.70	-1.0
1,560,488	-		BWI76_RS07395	0.71	-1.2
1,560,488	-		BWI76_RS07395	0.71	+0.4
1,560,488	-		BWI76_RS07395	0.71	-0.3
1,560,488	-		BWI76_RS07395	0.71	-0.9
1,560,488	-		BWI76_RS07395	0.71	-0.5
1,560,516	+		BWI76_RS07395	0.75	-0.3
1,560,531	-		BWI76_RS07395	0.78	+0.7
1,560,540	+		BWI76_RS07395	0.79	-0.5
1,560,543	-		BWI76_RS07395	0.80	-3.3
1,560,585	-		BWI76_RS07395	0.86	-2.1
1,560,647	+				+0.7
1,560,659	-				-1.3
1,560,662	+				-0.3
1,560,711	-				-0.3
1,560,740	+				-0.3
1,560,765	+		BWI76_RS07400	0.13	+0.5
1,560,773	-		BWI76_RS07400	0.14	-0.3
1,560,773	-		BWI76_RS07400	0.14	-0.3
1,560,773	-		BWI76_RS07400	0.14	+0.1
1,560,776	+		BWI76_RS07400	0.14	-1.2
1,560,776	+		BWI76_RS07400	0.14	+0.2
1,560,776	+		BWI76_RS07400	0.14	-0.3
1,560,776	+		BWI76_RS07400	0.14	-1.3
1,560,776	+		BWI76_RS07400	0.14	-0.9
1,560,776	+		BWI76_RS07400	0.14	-0.9
1,560,776	+		BWI76_RS07400	0.14	-0.6
1,560,779	-		BWI76_RS07400	0.15	-0.3
1,560,781	+		BWI76_RS07400	0.15	-2.3
1,560,784	-		BWI76_RS07400	0.15	-0.2
1,560,784	-		BWI76_RS07400	0.15	-0.0
1,560,784	-		BWI76_RS07400	0.15	+0.3
1,560,784	-		BWI76_RS07400	0.15	-1.7
1,560,784	-		BWI76_RS07400	0.15	+0.1
1,560,784	-		BWI76_RS07400	0.15	+2.0
1,560,784	-		BWI76_RS07400	0.15	-0.8
1,560,784	-		BWI76_RS07400	0.15	+0.7
1,560,793	-		BWI76_RS07400	0.17	+1.7
1,560,794	-		BWI76_RS07400	0.17	-2.9
1,560,829	+		BWI76_RS07400	0.22	-1.9
1,560,886	+		BWI76_RS07400	0.30	-3.0
1,560,927	-		BWI76_RS07400	0.36	-0.5
1,560,942	+		BWI76_RS07400	0.39	-2.5
1,560,942	+		BWI76_RS07400	0.39	+0.1
1,560,942	+		BWI76_RS07400	0.39	-0.5
1,560,942	+		BWI76_RS07400	0.39	-0.7
1,560,942	+		BWI76_RS07400	0.39	-2.8
1,560,942	+		BWI76_RS07400	0.39	-1.3
1,560,950	-		BWI76_RS07400	0.40	-0.3
1,560,950	-		BWI76_RS07400	0.40	-0.9
1,560,950	-		BWI76_RS07400	0.40	-0.3
1,560,950	-		BWI76_RS07400	0.40	+1.1
1,560,950	-		BWI76_RS07400	0.40	+0.7
1,560,950	-		BWI76_RS07400	0.40	+1.0
1,560,950	-		BWI76_RS07400	0.40	-3.3
1,560,952	+		BWI76_RS07400	0.40	-0.6
1,560,960	-		BWI76_RS07400	0.41	-0.9
1,560,966	+		BWI76_RS07400	0.42	-2.4
1,561,000	+		BWI76_RS07400	0.47	-1.9
1,561,000	+		BWI76_RS07400	0.47	-0.2
1,561,000	+		BWI76_RS07400	0.47	+0.0
1,561,008	-		BWI76_RS07400	0.48	-1.0
1,561,011	+		BWI76_RS07400	0.49	+0.4
1,561,023	+		BWI76_RS07400	0.51	-1.0
1,561,023	+				+0.7
1,561,023	+		BWI76_RS07400	0.51	+0.0
1,561,023	+		BWI76_RS07400	0.51	+0.8
1,561,023	+		BWI76_RS07400	0.51	+0.5
1,561,023	+				+0.7
1,561,031	-		BWI76_RS07400	0.52	+0.7
1,561,031	-		BWI76_RS07400	0.52	-0.6
1,561,031	-		BWI76_RS07400	0.52	-1.6
1,561,031	-		BWI76_RS07400	0.52	+0.4
1,561,043	-		BWI76_RS07400	0.53	-0.9
1,561,043	-		BWI76_RS07400	0.53	-0.3
1,561,070	+		BWI76_RS07400	0.57	-0.9
1,561,070	+		BWI76_RS07400	0.57	-0.3
1,561,070	+				-1.6
1,561,070	+		BWI76_RS07400	0.57	-1.6
1,561,070	+		BWI76_RS07400	0.57	-0.4
1,561,070	+		BWI76_RS07400	0.57	-0.1
1,561,070	+		BWI76_RS07400	0.57	+0.1
1,561,076	-		BWI76_RS07400	0.58	+0.3
1,561,078	-		BWI76_RS07400	0.59	-0.3
1,561,078	-		BWI76_RS07400	0.59	+0.3
1,561,097	+		BWI76_RS07400	0.61	-0.1
1,561,097	+		BWI76_RS07400	0.61	-1.9
1,561,105	-		BWI76_RS07400	0.63	+0.2
1,561,105	-		BWI76_RS07400	0.63	+0.4
1,561,105	-		BWI76_RS07400	0.63	+0.7
1,561,109	+		BWI76_RS07400	0.63	-1.0
1,561,112	+		BWI76_RS07400	0.64	-0.1
1,561,112	+		BWI76_RS07400	0.64	+0.1
1,561,114	+		BWI76_RS07400	0.64	-0.6
1,561,117	+		BWI76_RS07400	0.64	-0.2
1,561,122	-		BWI76_RS07400	0.65	-1.6
1,561,127	+		BWI76_RS07400	0.66	+0.7
1,561,132	+		BWI76_RS07400	0.67	+2.4
1,561,132	+		BWI76_RS07400	0.67	-3.0
1,561,139	+		BWI76_RS07400	0.68	-0.4
1,561,139	+		BWI76_RS07400	0.68	-1.8
1,561,139	+		BWI76_RS07400	0.68	-1.6
1,561,139	+		BWI76_RS07400	0.68	+0.2
1,561,140	-		BWI76_RS07400	0.68	-0.9
1,561,140	-		BWI76_RS07400	0.68	+0.2
1,561,140	-		BWI76_RS07400	0.68	+1.0
1,561,145	-		BWI76_RS07400	0.68	-0.5
1,561,147	-		BWI76_RS07400	0.69	-0.3
1,561,147	-		BWI76_RS07400	0.69	+0.0
1,561,147	-		BWI76_RS07400	0.69	+0.1
1,561,147	-		BWI76_RS07400	0.69	+0.3
1,561,147	-		BWI76_RS07400	0.69	-0.9
1,561,167	+		BWI76_RS07400	0.72	-0.6
1,561,208	+		BWI76_RS07400	0.78	-0.6
1,561,223	-		BWI76_RS07400	0.80	+0.3
1,561,252	+		BWI76_RS07400	0.84	+1.6
1,561,290	+		BWI76_RS07400	0.90	+0.3
1,561,302	+				-1.5
1,561,302	-				+0.4
1,561,302	-				-0.7
1,561,304	+				-0.9
1,561,307	+				+0.8
1,561,365	+				+0.2
1,561,370	+				+0.4
1,561,370	+				+0.9
1,561,379	-				+0.3
1,561,383	-				-0.9
1,561,390	-				-0.5
1,561,397	+				+0.2
1,561,405	-				+0.2
1,561,405	-				+0.8
1,561,530	+		BWI76_RS07405	0.11	+0.4
1,561,563	-		BWI76_RS07405	0.13	+0.4
1,561,646	-		BWI76_RS07405	0.18	+0.4
1,561,695	+		BWI76_RS07405	0.21	-1.1
1,561,775	+		BWI76_RS07405	0.26	-1.3
1,561,816	+		BWI76_RS07405	0.28	-2.0
1,561,873	-		BWI76_RS07405	0.32	+0.3
1,561,873	-		BWI76_RS07405	0.32	-0.7
1,561,955	-		BWI76_RS07405	0.37	-0.1
1,562,098	-		BWI76_RS07405	0.46	-0.9
1,562,119	-		BWI76_RS07405	0.47	-1.8
1,562,252	-		BWI76_RS07405	0.55	-0.1
1,562,253	-		BWI76_RS07405	0.55	-0.5
1,562,253	-		BWI76_RS07405	0.55	+0.1
1,562,253	-		BWI76_RS07405	0.55	-0.4
1,562,278	-		BWI76_RS07405	0.57	+0.8
1,562,290	-		BWI76_RS07405	0.57	+0.2
1,562,290	-		BWI76_RS07405	0.57	-0.2
1,562,290	-		BWI76_RS07405	0.57	-1.9