Experiment: RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05730 and BWI76_RS05735 are separated by 99 nucleotides BWI76_RS05735 and BWI76_RS05740 overlap by 14 nucleotides BWI76_RS05740 and BWI76_RS05745 are separated by 143 nucleotides
BWI76_RS05730: BWI76_RS05730 - hypothetical protein, at 1,206,461 to 1,207,207
_RS05730
BWI76_RS05735: BWI76_RS05735 - transcriptional regulator, at 1,207,307 to 1,207,675
_RS05735
BWI76_RS05740: BWI76_RS05740 - hypothetical protein, at 1,207,662 to 1,207,898
_RS05740
BWI76_RS05745: BWI76_RS05745 - hypothetical protein, at 1,208,042 to 1,209,280
_RS05745
Position (kb) 1207
1208 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1206.780 kb on + strand, within BWI76_RS05730 at 1206.780 kb on + strand, within BWI76_RS05730 at 1206.788 kb on - strand, within BWI76_RS05730 at 1206.893 kb on - strand, within BWI76_RS05730 at 1206.919 kb on + strand, within BWI76_RS05730 at 1206.919 kb on + strand, within BWI76_RS05730 at 1206.924 kb on + strand, within BWI76_RS05730 at 1206.995 kb on + strand, within BWI76_RS05730 at 1207.021 kb on + strand, within BWI76_RS05730 at 1207.021 kb on + strand, within BWI76_RS05730 at 1207.029 kb on - strand, within BWI76_RS05730 at 1207.050 kb on + strand, within BWI76_RS05730 at 1207.050 kb on + strand, within BWI76_RS05730 at 1207.060 kb on - strand, within BWI76_RS05730 at 1207.101 kb on - strand, within BWI76_RS05730 at 1207.102 kb on + strand, within BWI76_RS05730 at 1207.110 kb on - strand, within BWI76_RS05730 at 1207.235 kb on + strand at 1207.241 kb on + strand at 1207.248 kb on + strand at 1207.256 kb on - strand at 1207.373 kb on + strand, within BWI76_RS05735 at 1207.449 kb on + strand, within BWI76_RS05735 at 1207.503 kb on + strand, within BWI76_RS05735 at 1207.503 kb on + strand, within BWI76_RS05735 at 1207.511 kb on - strand, within BWI76_RS05735 at 1207.551 kb on - strand, within BWI76_RS05735 at 1207.556 kb on + strand, within BWI76_RS05735 at 1207.566 kb on + strand, within BWI76_RS05735 at 1207.586 kb on + strand, within BWI76_RS05735 at 1207.588 kb on + strand, within BWI76_RS05735 at 1207.593 kb on + strand, within BWI76_RS05735 at 1207.598 kb on + strand, within BWI76_RS05735 at 1207.598 kb on + strand, within BWI76_RS05735 at 1207.598 kb on + strand, within BWI76_RS05735 at 1207.601 kb on - strand, within BWI76_RS05735 at 1207.603 kb on + strand, within BWI76_RS05735 at 1207.606 kb on - strand, within BWI76_RS05735 at 1207.618 kb on - strand, within BWI76_RS05735 at 1207.654 kb on + strand at 1207.659 kb on + strand at 1207.659 kb on + strand at 1207.667 kb on - strand at 1207.667 kb on - strand at 1207.667 kb on - strand at 1207.678 kb on - strand at 1207.701 kb on - strand, within BWI76_RS05740 at 1207.744 kb on + strand, within BWI76_RS05740 at 1207.768 kb on + strand, within BWI76_RS05740 at 1207.775 kb on + strand, within BWI76_RS05740 at 1207.775 kb on + strand, within BWI76_RS05740 at 1207.811 kb on - strand, within BWI76_RS05740 at 1207.839 kb on - strand, within BWI76_RS05740 at 1207.839 kb on - strand, within BWI76_RS05740 at 1208.008 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Cupriavidus sp. AnTP704 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,206,780 + BWI76_RS05730 0.43 -0.7 1,206,780 + BWI76_RS05730 0.43 +2.1 1,206,788 - BWI76_RS05730 0.44 +0.2 1,206,893 - BWI76_RS05730 0.58 -1.4 1,206,919 + BWI76_RS05730 0.61 +0.1 1,206,919 + BWI76_RS05730 0.61 -1.1 1,206,924 + BWI76_RS05730 0.62 +1.0 1,206,995 + BWI76_RS05730 0.71 +1.2 1,207,021 + BWI76_RS05730 0.75 +0.3 1,207,021 + BWI76_RS05730 0.75 -1.0 1,207,029 - BWI76_RS05730 0.76 -1.5 1,207,050 + BWI76_RS05730 0.79 +0.2 1,207,050 + BWI76_RS05730 0.79 -0.3 1,207,060 - BWI76_RS05730 0.80 +0.1 1,207,101 - BWI76_RS05730 0.86 -0.6 1,207,102 + BWI76_RS05730 0.86 +0.6 1,207,110 - BWI76_RS05730 0.87 -2.6 1,207,235 + -0.2 1,207,241 + +0.8 1,207,248 + +0.6 1,207,256 - -0.6 1,207,373 + BWI76_RS05735 0.18 -0.0 1,207,449 + BWI76_RS05735 0.38 +1.3 1,207,503 + BWI76_RS05735 0.53 +0.4 1,207,503 + BWI76_RS05735 0.53 +0.3 1,207,511 - BWI76_RS05735 0.55 +0.8 1,207,551 - BWI76_RS05735 0.66 +1.1 1,207,556 + BWI76_RS05735 0.67 +0.2 1,207,566 + BWI76_RS05735 0.70 +0.3 1,207,586 + BWI76_RS05735 0.76 +0.7 1,207,588 + BWI76_RS05735 0.76 -1.9 1,207,593 + BWI76_RS05735 0.78 +3.4 1,207,598 + BWI76_RS05735 0.79 -0.3 1,207,598 + BWI76_RS05735 0.79 +0.0 1,207,598 + BWI76_RS05735 0.79 +0.8 1,207,601 - BWI76_RS05735 0.80 +0.1 1,207,603 + BWI76_RS05735 0.80 -0.7 1,207,606 - BWI76_RS05735 0.81 +1.8 1,207,618 - BWI76_RS05735 0.84 -2.0 1,207,654 + -0.2 1,207,659 + -0.7 1,207,659 + +0.4 1,207,667 - -0.5 1,207,667 - -0.8 1,207,667 - -0.2 1,207,678 - -0.0 1,207,701 - BWI76_RS05740 0.16 +0.2 1,207,744 + BWI76_RS05740 0.35 -1.0 1,207,768 + BWI76_RS05740 0.45 -0.7 1,207,775 + BWI76_RS05740 0.48 +0.1 1,207,775 + BWI76_RS05740 0.48 +0.5 1,207,811 - BWI76_RS05740 0.63 -1.5 1,207,839 - BWI76_RS05740 0.75 -0.0 1,207,839 - BWI76_RS05740 0.75 -1.4 1,208,008 + -2.5
Or see this region's nucleotide sequence