Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20697

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20695 and SM_b20696 overlap by 4 nucleotidesSM_b20696 and SM_b20697 are separated by 101 nucleotidesSM_b20697 and SM_b20698 are separated by 151 nucleotides SM_b20695: SM_b20695 - hypothetical protein, at 1,495,765 to 1,496,271 _b20695 SM_b20696: SM_b20696 - hypothetical protein, at 1,496,268 to 1,496,753 _b20696 SM_b20697: SM_b20697 - peptidase, arginine utilization protein RocB, at 1,496,855 to 1,498,549 _b20697 SM_b20698: SM_b20698 - transporter, at 1,498,701 to 1,500,353 _b20698 Position (kb) 1496 1497 1498 1499Strain fitness (log2 ratio) -3 -2 -1 0 1at 1495.870 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695at 1495.870 kb on - strand, within SM_b20695at 1496.006 kb on + strand, within SM_b20695at 1496.006 kb on + strand, within SM_b20695at 1496.007 kb on - strand, within SM_b20695at 1496.007 kb on - strand, within SM_b20695at 1496.007 kb on - strand, within SM_b20695at 1496.046 kb on + strand, within SM_b20695at 1496.047 kb on - strand, within SM_b20695at 1496.079 kb on + strand, within SM_b20695at 1496.126 kb on + strand, within SM_b20695at 1496.145 kb on + strand, within SM_b20695at 1496.275 kb on + strandat 1496.275 kb on + strandat 1496.275 kb on + strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.276 kb on - strandat 1496.364 kb on + strand, within SM_b20696at 1496.420 kb on + strand, within SM_b20696at 1496.433 kb on + strand, within SM_b20696at 1496.531 kb on + strand, within SM_b20696at 1496.531 kb on + strand, within SM_b20696at 1496.532 kb on - strand, within SM_b20696at 1496.532 kb on - strand, within SM_b20696at 1496.535 kb on + strand, within SM_b20696at 1496.535 kb on + strand, within SM_b20696at 1496.535 kb on + strand, within SM_b20696at 1496.536 kb on - strand, within SM_b20696at 1496.536 kb on - strand, within SM_b20696at 1496.686 kb on - strand, within SM_b20696at 1496.766 kb on - strandat 1496.766 kb on - strandat 1496.786 kb on + strandat 1496.787 kb on - strandat 1496.844 kb on - strandat 1496.931 kb on + strandat 1496.932 kb on - strandat 1497.369 kb on + strand, within SM_b20697at 1497.487 kb on - strand, within SM_b20697at 1497.487 kb on - strand, within SM_b20697at 1497.589 kb on - strand, within SM_b20697at 1497.605 kb on + strand, within SM_b20697at 1497.780 kb on + strand, within SM_b20697at 1497.781 kb on - strand, within SM_b20697at 1497.822 kb on - strand, within SM_b20697at 1498.239 kb on + strand, within SM_b20697at 1498.239 kb on + strand, within SM_b20697at 1498.239 kb on + strand, within SM_b20697at 1498.240 kb on - strand, within SM_b20697at 1498.240 kb on - strand, within SM_b20697at 1498.479 kb on - strandat 1498.702 kb on + strandat 1498.703 kb on - strandat 1499.098 kb on - strand, within SM_b20698at 1499.098 kb on - strand, within SM_b20698at 1499.123 kb on + strand, within SM_b20698

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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1,495,870 - SM_b20695 0.21 +0.0
1,495,870 - SM_b20695 0.21 -0.2
1,495,870 - SM_b20695 0.21 -0.3
1,496,006 + SM_b20695 0.48 -0.2
1,496,006 + SM_b20695 0.48 -0.3
1,496,007 - SM_b20695 0.48 -0.0
1,496,007 - SM_b20695 0.48 -0.4
1,496,007 - SM_b20695 0.48 +1.4
1,496,046 + SM_b20695 0.55 -1.5
1,496,047 - SM_b20695 0.56 -0.8
1,496,079 + SM_b20695 0.62 +0.0
1,496,126 + SM_b20695 0.71 -0.9
1,496,145 + SM_b20695 0.75 -0.0
1,496,275 + -0.1
1,496,275 + +1.2
1,496,275 + -3.0
1,496,276 - +1.2
1,496,276 - +0.8
1,496,276 - -0.9
1,496,276 - -0.8
1,496,276 - +1.2
1,496,364 + SM_b20696 0.20 +0.1
1,496,420 + SM_b20696 0.31 -0.2
1,496,433 + SM_b20696 0.34 +0.2
1,496,531 + SM_b20696 0.54 +0.8
1,496,531 + SM_b20696 0.54 -0.5
1,496,532 - SM_b20696 0.54 +0.6
1,496,532 - SM_b20696 0.54 +0.4
1,496,535 + SM_b20696 0.55 -0.3
1,496,535 + SM_b20696 0.55 -0.0
1,496,535 + SM_b20696 0.55 +0.1
1,496,536 - SM_b20696 0.55 +0.1
1,496,536 - SM_b20696 0.55 -0.2
1,496,686 - SM_b20696 0.86 +0.2
1,496,766 - +0.4
1,496,766 - +0.2
1,496,786 + +0.9
1,496,787 - -0.9
1,496,844 - +0.3
1,496,931 + -1.7
1,496,932 - -0.1
1,497,369 + SM_b20697 0.30 +0.0
1,497,487 - SM_b20697 0.37 -0.4
1,497,487 - SM_b20697 0.37 -0.6
1,497,589 - SM_b20697 0.43 -0.4
1,497,605 + SM_b20697 0.44 -0.4
1,497,780 + SM_b20697 0.55 +0.3
1,497,781 - SM_b20697 0.55 -0.1
1,497,822 - SM_b20697 0.57 -1.2
1,498,239 + SM_b20697 0.82 -0.3
1,498,239 + SM_b20697 0.82 -1.0
1,498,239 + SM_b20697 0.82 -0.3
1,498,240 - SM_b20697 0.82 -0.7
1,498,240 - SM_b20697 0.82 -0.5
1,498,479 - +0.2
1,498,702 + -0.1
1,498,703 - -1.7
1,499,098 - SM_b20698 0.24 +0.2
1,499,098 - SM_b20698 0.24 -0.2
1,499,123 + SM_b20698 0.26 -0.7

Or see this region's nucleotide sequence