Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS22595

Experiment: RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Pseudomonas simiae WCS417 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
4,709,262	+		BWI76_RS22585	0.89	+3.1
4,709,265	-		BWI76_RS22585	0.89	+1.7
4,709,267	+		BWI76_RS22585	0.89	-0.0
4,709,267	+		BWI76_RS22585	0.89	-2.6
4,709,267	+		BWI76_RS22585	0.89	+0.4
4,709,270	-		BWI76_RS22585	0.90	-2.2
4,709,270	-		BWI76_RS22585	0.90	-1.6
4,709,270	-		BWI76_RS22585	0.90	+0.1
4,709,270	-		BWI76_RS22585	0.90	-1.4
4,709,275	-		BWI76_RS22585	0.90	-0.5
4,709,275	-		BWI76_RS22585	0.90	-0.3
4,709,275	-		BWI76_RS22585	0.90	-0.2
4,709,282	-				-0.7
4,709,282	-				+1.2
4,709,298	-				+0.6
4,709,310	-				-0.0
4,709,360	+				+0.2
4,709,363	+				+0.5
4,709,363	+				-0.5
4,709,363	+				-1.6
4,709,371	-				+0.4
4,709,371	-				-0.2
4,709,371	-				-1.1
4,709,371	-				-2.1
4,709,376	-				+2.4
4,709,406	-				-2.0
4,709,448	+				-0.6
4,709,449	+				-1.4
4,709,454	+				-2.6
4,709,454	+				-1.2
4,709,454	+				+0.4
4,709,454	+				+1.0
4,709,455	+				+0.8
4,709,460	+				+1.8
4,709,462	+				-2.7
4,709,462	+				-0.3
4,709,462	+				-0.6
4,709,462	+				+1.0
4,709,462	+				-2.0
4,709,462	+				-0.4
4,709,462	-				+0.4
4,709,469	-				+0.7
4,709,470	-				+0.6
4,709,470	-				+0.7
4,709,470	-				-2.4
4,709,476	-				+1.0
4,709,494	-				+0.4
4,709,534	-				-2.6
4,709,560	-				-3.4
4,709,579	-				-1.0
4,709,600	-				+0.2
4,709,608	-				+1.7
4,709,650	+				-1.0
4,709,661	+		BWI76_RS22590	0.10	+1.1
4,709,676	-		BWI76_RS22590	0.13	+1.5
4,709,676	-		BWI76_RS22590	0.13	-1.2
4,709,676	-		BWI76_RS22590	0.13	+0.5
4,709,681	-		BWI76_RS22590	0.14	+1.0
4,709,713	+		BWI76_RS22590	0.20	-1.0
4,709,720	-		BWI76_RS22590	0.21	-0.0
4,709,721	-		BWI76_RS22590	0.21	-0.0
4,709,726	-		BWI76_RS22590	0.22	+0.1
4,709,733	+		BWI76_RS22590	0.23	+0.6
4,709,816	+		BWI76_RS22590	0.38	+1.0
4,709,816	+		BWI76_RS22590	0.38	-0.0
4,709,826	-		BWI76_RS22590	0.40	+1.0
4,709,843	-		BWI76_RS22590	0.43	-0.5
4,709,850	+		BWI76_RS22590	0.44	-0.1
4,709,857	-		BWI76_RS22590	0.46	-1.0
4,709,867	+		BWI76_RS22590	0.47	+1.0
4,709,867	-		BWI76_RS22590	0.47	-0.6
4,709,869	-		BWI76_RS22590	0.48	-0.0
4,709,869	-		BWI76_RS22590	0.48	-0.0
4,709,874	-		BWI76_RS22590	0.49	-3.4
4,709,875	-		BWI76_RS22590	0.49	-1.9
4,709,882	+		BWI76_RS22590	0.50	-2.0
4,709,890	-		BWI76_RS22590	0.52	-2.2
4,709,890	-		BWI76_RS22590	0.52	-0.0
4,709,892	+		BWI76_RS22590	0.52	-1.0
4,709,900	-		BWI76_RS22590	0.53	-1.6
4,709,900	-		BWI76_RS22590	0.53	-0.9
4,709,900	-		BWI76_RS22590	0.53	-2.8
4,709,900	-		BWI76_RS22590	0.53	-1.0
4,709,917	-		BWI76_RS22590	0.56	-0.6
4,709,958	+		BWI76_RS22590	0.64	-1.0
4,710,037	+		BWI76_RS22590	0.78	-2.5
4,710,042	-		BWI76_RS22590	0.79	+1.0
4,710,068	+		BWI76_RS22590	0.84	-0.0
4,710,068	+		BWI76_RS22590	0.84	+0.7
4,710,070	-		BWI76_RS22590	0.84	+0.0
4,710,090	-		BWI76_RS22590	0.88	+1.7
4,710,101	+		BWI76_RS22590	0.90	-3.7
4,710,102	+		BWI76_RS22590	0.90	+0.4
4,710,102	+		BWI76_RS22590	0.90	+2.0
4,710,102	+		BWI76_RS22590	0.90	+0.5
4,710,117	+				+1.1
4,710,135	+				-1.1
4,710,135	+				-2.0
4,710,135	+				+1.2
4,710,143	-				+0.0
4,710,148	+				-0.3
4,710,149	+				-0.1
4,710,156	-				+0.1
4,710,157	-				-1.6
4,710,159	+				+0.2
4,710,196	-				+0.2
4,710,276	+				-1.6
4,710,276	+				-0.3
4,710,281	+				-1.0
4,710,281	+				+0.4
4,710,283	+				+0.5
4,710,283	+				-3.1
4,710,284	-				-1.5
4,710,287	+				+1.0
4,710,295	+		BWI76_RS22595	0.10	-2.0
4,710,299	+		BWI76_RS22595	0.11	+0.4
4,710,299	+		BWI76_RS22595	0.11	-1.4
4,710,299	+		BWI76_RS22595	0.11	-2.0
4,710,299	+		BWI76_RS22595	0.11	-1.9
4,710,301	-		BWI76_RS22595	0.11	-0.7
4,710,305	-		BWI76_RS22595	0.12	-2.0
4,710,307	-		BWI76_RS22595	0.12	-0.6
4,710,307	-		BWI76_RS22595	0.12	-2.0
4,710,307	-		BWI76_RS22595	0.12	+0.9
4,710,307	-		BWI76_RS22595	0.12	+4.1
4,710,307	-				-0.8
4,710,307	-		BWI76_RS22595	0.12	-3.3
4,710,307	-		BWI76_RS22595	0.12	+0.2
4,710,307	-		BWI76_RS22595	0.12	+0.2
4,710,307	-		BWI76_RS22595	0.12	-1.0
4,710,307	-		BWI76_RS22595	0.12	-0.4
4,710,307	-		BWI76_RS22595	0.12	+0.3
4,710,307	-		BWI76_RS22595	0.12	+0.3
4,710,307	-		BWI76_RS22595	0.12	-2.7
4,710,307	-		BWI76_RS22595	0.12	-0.5
4,710,307	-		BWI76_RS22595	0.12	-0.4
4,710,307	-		BWI76_RS22595	0.12	+0.3
4,710,307	-		BWI76_RS22595	0.12	+0.3
4,710,307	-		BWI76_RS22595	0.12	-1.1
4,710,352	+		BWI76_RS22595	0.21	-3.5
4,710,353	+		BWI76_RS22595	0.21	-2.8
4,710,353	+		BWI76_RS22595	0.21	-1.6
4,710,361	-		BWI76_RS22595	0.22	-0.7
4,710,362	+		BWI76_RS22595	0.23	-0.0
4,710,365	+		BWI76_RS22595	0.23	-1.8
4,710,373	-		BWI76_RS22595	0.25	-2.6
4,710,373	-		BWI76_RS22595	0.25	+0.6
4,710,375	+		BWI76_RS22595	0.25	-0.5
4,710,375	+		BWI76_RS22595	0.25	-2.5
4,710,383	-		BWI76_RS22595	0.26	-1.8
4,710,384	+		BWI76_RS22595	0.27	+0.1
4,710,392	-		BWI76_RS22595	0.28	-3.4
4,710,392	-		BWI76_RS22595	0.28	+0.0
4,710,394	+		BWI76_RS22595	0.29	+1.0
4,710,398	+		BWI76_RS22595	0.29	-1.4
4,710,407	-		BWI76_RS22595	0.31	+0.6
4,710,407	-		BWI76_RS22595	0.31	-0.1
4,710,408	-		BWI76_RS22595	0.31	-1.2
4,710,408	-		BWI76_RS22595	0.31	-1.0
4,710,410	+		BWI76_RS22595	0.31	-2.0
4,710,428	+		BWI76_RS22595	0.35	+1.0
4,710,428	-		BWI76_RS22595	0.35	-0.2
4,710,469	+		BWI76_RS22595	0.42	+0.3
4,710,473	+		BWI76_RS22595	0.43	-0.6
4,710,473	+		BWI76_RS22595	0.43	-1.2
4,710,473	+		BWI76_RS22595	0.43	-1.8
4,710,481	-		BWI76_RS22595	0.45	-0.7
4,710,481	-		BWI76_RS22595	0.45	-0.0
4,710,481	-		BWI76_RS22595	0.45	-0.7
4,710,518	-		BWI76_RS22595	0.51	+0.3
4,710,525	+		BWI76_RS22595	0.53	-0.0
4,710,525	+		BWI76_RS22595	0.53	-0.2
4,710,525	+		BWI76_RS22595	0.53	-0.0
4,710,552	-		BWI76_RS22595	0.58	-0.3
4,710,562	-		BWI76_RS22595	0.60	+0.1
4,710,597	-		BWI76_RS22595	0.66	+1.2
4,710,612	-		BWI76_RS22595	0.69	-3.4
4,710,639	+		BWI76_RS22595	0.74	-0.4
4,710,647	+		BWI76_RS22595	0.75	-0.0
4,710,647	-		BWI76_RS22595	0.75	-0.0
4,710,654	+		BWI76_RS22595	0.77	-0.0
4,710,664	+		BWI76_RS22595	0.79	-1.0
4,710,664	+		BWI76_RS22595	0.79	+1.0
4,710,664	+		BWI76_RS22595	0.79	-2.0
4,710,664	+		BWI76_RS22595	0.79	-0.6
4,710,664	+		BWI76_RS22595	0.79	-1.6
4,710,672	-		BWI76_RS22595	0.80	+1.7
4,710,672	-		BWI76_RS22595	0.80	-0.2
4,710,672	-		BWI76_RS22595	0.80	-2.0
4,710,672	-		BWI76_RS22595	0.80	-2.0
4,710,672	-		BWI76_RS22595	0.80	-2.0
4,710,672	-		BWI76_RS22595	0.80	-2.2
4,710,672	-		BWI76_RS22595	0.80	-0.5
4,710,672	-		BWI76_RS22595	0.80	+0.8
4,710,672	-		BWI76_RS22595	0.80	-3.0
4,710,672	-		BWI76_RS22595	0.80	-0.6
4,710,672	-		BWI76_RS22595	0.80	-0.7
4,710,672	-		BWI76_RS22595	0.80	-0.1
4,710,687	-		BWI76_RS22595	0.83	-0.3
4,710,687	-		BWI76_RS22595	0.83	-1.2
4,710,706	+		BWI76_RS22595	0.86	-2.2
4,710,706	+		BWI76_RS22595	0.86	-0.0
4,710,706	+		BWI76_RS22595	0.86	+0.2
4,710,712	+		BWI76_RS22595	0.87	-0.2
4,710,714	-		BWI76_RS22595	0.88	-0.6
4,710,716	+		BWI76_RS22595	0.88	-1.0
4,710,719	-		BWI76_RS22595	0.89	-0.6
4,710,719	-		BWI76_RS22595	0.89	-0.6
4,710,719	-		BWI76_RS22595	0.89	-0.9
4,710,721	+		BWI76_RS22595	0.89	-3.6
4,710,722	+		BWI76_RS22595	0.89	-0.2
4,710,730	-				-2.5
4,710,730	-				+1.0
4,710,731	-				-0.6
4,710,734	+				-2.8
4,710,734	+				-1.4
4,710,737	-				-2.0
4,710,740	-				+0.3
4,710,741	+				-0.0
4,710,742	+				-0.6
4,710,742	-				-0.3
4,710,742	-				-0.6
4,710,750	-				-1.4
4,710,761	-				-0.2
4,710,771	-				-1.4
4,710,993	-				-0.0
4,710,999	-				-0.0
4,711,075	-				-0.7
4,711,117	-				-1.0
4,711,199	-				+0.2
4,711,199	-				+1.0
4,711,214	+				+0.2
4,711,214	+				+2.0
4,711,214	+				-0.3
4,711,214	+				+0.4
4,711,215	-				-0.6
4,711,222	-				-2.2
4,711,226	+				-1.0
4,711,227	+				+1.0
4,711,227	+				+1.1
4,711,227	+				-3.0
4,711,227	+				+0.9
4,711,227	+				-0.0
4,711,227	+				+0.4
4,711,227	+				+0.0
4,711,227	+				-1.8
4,711,227	+				-0.2
4,711,227	+				+0.5
4,711,227	+				-0.4
4,711,227	+				-2.0
4,711,227	+				+0.4
4,711,227	+				-0.0
4,711,227	+				+0.5
4,711,227	+				+0.2
4,711,227	+				-0.6
4,711,227	+				-0.4
4,711,227	+				+0.6
4,711,227	+				-0.6
4,711,227	+				-0.5
4,711,227	+				+1.0
4,711,227	+				-1.9
4,711,227	+				-0.6
4,711,227	+				+0.1
4,711,227	+				-0.5
4,711,227	+				+0.8
4,711,227	+				+0.7
4,711,227	+				-2.0
4,711,227	+				-1.0
4,711,227	+				+0.2
4,711,227	+				+0.4
4,711,227	+				+0.5
4,711,227	+				+0.0
4,711,227	+				-0.4
4,711,227	+				+1.0
4,711,227	+				+0.0
4,711,235	-				-0.0
4,711,235	-				-0.8
4,711,235	-				-0.0
4,711,235	-				-0.0
4,711,235	-				-2.2
4,711,235	-				-2.0
4,711,235	-				+1.0
4,711,235	-				-0.9
4,711,235	-				-0.6
4,711,235	-				+1.0
4,711,235	-				+1.3
4,711,235	-				-0.9
4,711,235	-				+0.5
4,711,235	-				-3.5
4,711,235	-				-0.3
4,711,235	-				-0.0
4,711,235	-				-2.0
4,711,235	-				+0.3
4,711,235	-				+0.1
4,711,276	+				+0.0
4,711,283	+				-1.0
4,711,283	+				-0.5
4,711,283	+				-1.1
4,711,283	+				-0.6
4,711,283	+				-2.2
4,711,283	+				-0.6
4,711,283	+				-0.2
4,711,306	+				-0.2
4,711,306	+				+0.9
4,711,306	+				-2.0
4,711,306	+				+0.1
4,711,306	+				+1.0
4,711,306	+				+0.4
4,711,306	+				-1.4
4,711,306	+				+0.4
4,711,306	+				+0.1
4,711,306	+				-1.4
4,711,306	+				-0.8
4,711,314	-				+0.5
4,711,314	-				-0.2
4,711,314	-				-0.5
4,711,314	-				-0.8
4,711,314	-				-0.1
4,711,314	-				-0.0
4,711,314	-				+0.6
4,711,386	+				+1.2
4,711,392	-				+1.0
4,711,394	-				+0.4
4,711,460	+				-0.0
4,711,461	-				-2.0
4,711,468	+				+0.2
4,711,486	-				+1.1
4,711,493	-				-2.5
4,711,654	+				+0.4
4,711,713	+		BWI76_RS22600	0.11	+0.4