Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00877 and SMc00876 are separated by 461 nucleotides SMc00876 and SMc00874 are separated by 294 nucleotides
SMc00877: SMc00877 - transcriptional regulator, at 909,133 to 909,966
SMc00877
SMc00876: SMc00876 - ATP-binding MRP protein, at 910,428 to 911,582
SMc00876
SMc00874: SMc00874 - magnesium/cobalt transporter CorA, at 911,877 to 912,857
SMc00874
Position (kb) 910
911
912 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 909.445 kb on + strand, within SMc00877 at 909.445 kb on + strand, within SMc00877 at 909.445 kb on + strand, within SMc00877 at 909.445 kb on + strand, within SMc00877 at 909.446 kb on - strand, within SMc00877 at 909.571 kb on + strand, within SMc00877 at 909.571 kb on + strand, within SMc00877 at 909.571 kb on + strand, within SMc00877 at 909.572 kb on - strand, within SMc00877 at 909.599 kb on + strand, within SMc00877 at 909.599 kb on + strand, within SMc00877 at 909.614 kb on - strand, within SMc00877 at 909.727 kb on + strand, within SMc00877 at 909.727 kb on + strand, within SMc00877 at 909.727 kb on + strand, within SMc00877 at 909.727 kb on + strand, within SMc00877 at 909.728 kb on - strand, within SMc00877 at 909.847 kb on - strand, within SMc00877 at 909.880 kb on + strand, within SMc00877 at 909.880 kb on + strand, within SMc00877 at 909.881 kb on - strand, within SMc00877 at 909.955 kb on + strand at 909.955 kb on + strand at 909.955 kb on + strand at 909.956 kb on - strand at 909.957 kb on + strand at 909.965 kb on - strand at 909.977 kb on + strand at 909.977 kb on + strand at 910.024 kb on + strand at 910.041 kb on - strand at 910.203 kb on - strand at 910.263 kb on + strand at 910.263 kb on + strand at 910.264 kb on - strand at 910.334 kb on + strand at 910.335 kb on - strand at 910.338 kb on + strand at 910.338 kb on + strand at 910.339 kb on - strand at 910.339 kb on - strand at 910.339 kb on - strand at 910.341 kb on + strand at 910.341 kb on + strand at 910.341 kb on + strand at 910.342 kb on - strand at 910.342 kb on - strand at 910.342 kb on - strand at 910.345 kb on + strand at 910.345 kb on + strand at 910.345 kb on + strand at 910.346 kb on - strand at 910.346 kb on - strand at 910.456 kb on + strand at 910.520 kb on - strand at 910.799 kb on + strand, within SMc00876 at 910.911 kb on + strand, within SMc00876 at 910.912 kb on - strand, within SMc00876 at 910.912 kb on - strand, within SMc00876 at 910.912 kb on - strand, within SMc00876 at 910.976 kb on + strand, within SMc00876 at 910.977 kb on - strand, within SMc00876 at 910.979 kb on - strand, within SMc00876 at 910.995 kb on + strand, within SMc00876 at 910.996 kb on - strand, within SMc00876 at 911.389 kb on + strand, within SMc00876 at 911.390 kb on - strand, within SMc00876 at 911.493 kb on + strand at 911.494 kb on - strand at 911.581 kb on - strand at 911.680 kb on - strand at 911.711 kb on - strand at 911.711 kb on - strand at 911.826 kb on + strand at 911.966 kb on - strand at 911.966 kb on - strand at 912.075 kb on + strand, within SMc00874 at 912.077 kb on + strand, within SMc00874 at 912.195 kb on + strand, within SMc00874 at 912.234 kb on - strand, within SMc00874 at 912.234 kb on - strand, within SMc00874 at 912.234 kb on - strand, within SMc00874 at 912.558 kb on - strand, within SMc00874
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 909,445 + SMc00877 0.37 +0.5 909,445 + SMc00877 0.37 +0.3 909,445 + SMc00877 0.37 -0.0 909,445 + SMc00877 0.37 -0.3 909,446 - SMc00877 0.38 -0.3 909,571 + SMc00877 0.53 +1.5 909,571 + SMc00877 0.53 -0.5 909,571 + SMc00877 0.53 -0.3 909,572 - SMc00877 0.53 +0.8 909,599 + SMc00877 0.56 -0.0 909,599 + SMc00877 0.56 -0.1 909,614 - SMc00877 0.58 +0.3 909,727 + SMc00877 0.71 +1.3 909,727 + SMc00877 0.71 +0.4 909,727 + SMc00877 0.71 +0.5 909,727 + SMc00877 0.71 -0.3 909,728 - SMc00877 0.71 +0.6 909,847 - SMc00877 0.86 -0.2 909,880 + SMc00877 0.90 +0.4 909,880 + SMc00877 0.90 +0.0 909,881 - SMc00877 0.90 +0.4 909,955 + +1.2 909,955 + +0.2 909,955 + +0.1 909,956 - +0.3 909,957 + -0.2 909,965 - -0.3 909,977 + +0.9 909,977 + +0.3 910,024 + -0.6 910,041 - +0.7 910,203 - +0.0 910,263 + +0.0 910,263 + -0.1 910,264 - +0.3 910,334 + -0.4 910,335 - +0.4 910,338 + -1.2 910,338 + +0.2 910,339 - -2.9 910,339 - -0.4 910,339 - +0.7 910,341 + +1.7 910,341 + -0.9 910,341 + +0.1 910,342 - +0.2 910,342 - -0.5 910,342 - -0.2 910,345 + +0.1 910,345 + -0.9 910,345 + -0.2 910,346 - -0.5 910,346 - +0.2 910,456 + -1.7 910,520 - -3.7 910,799 + SMc00876 0.32 -2.6 910,911 + SMc00876 0.42 -4.4 910,912 - SMc00876 0.42 -3.5 910,912 - SMc00876 0.42 -1.5 910,912 - SMc00876 0.42 -2.5 910,976 + SMc00876 0.47 -3.6 910,977 - SMc00876 0.48 -3.5 910,979 - SMc00876 0.48 -0.5 910,995 + SMc00876 0.49 -5.3 910,996 - SMc00876 0.49 -3.1 911,389 + SMc00876 0.83 -3.7 911,390 - SMc00876 0.83 -2.3 911,493 + -3.8 911,494 - -3.5 911,581 - -0.7 911,680 - +0.2 911,711 - +0.1 911,711 - -0.9 911,826 + +0.1 911,966 - +0.0 911,966 - +0.1 912,075 + SMc00874 0.20 +0.3 912,077 + SMc00874 0.20 -0.3 912,195 + SMc00874 0.32 -0.2 912,234 - SMc00874 0.36 -0.4 912,234 - SMc00874 0.36 +0.1 912,234 - SMc00874 0.36 -0.1 912,558 - SMc00874 0.69 +0.3
Or see this region's nucleotide sequence