Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26340 and BWI76_RS26345 overlap by 4 nucleotides BWI76_RS26345 and BWI76_RS26350 are separated by 60 nucleotides
BWI76_RS26340: BWI76_RS26340 - branched-chain amino acid ABC transporter permease, at 5,452,093 to 5,453,373
_RS26340
BWI76_RS26345: BWI76_RS26345 - branched-chain amino acid ABC transporter permease LivH, at 5,453,370 to 5,454,296
_RS26345
BWI76_RS26350: BWI76_RS26350 - branched chain amino acid ABC transporter substrate-binding protein, at 5,454,357 to 5,455,466
_RS26350
Position (kb)
5453
5454
5455 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5452.518 kb on - strand, within BWI76_RS26340 at 5452.548 kb on + strand at 5452.574 kb on + strand, within BWI76_RS26340 at 5452.712 kb on - strand, within BWI76_RS26340 at 5452.712 kb on - strand, within BWI76_RS26340 at 5452.844 kb on + strand, within BWI76_RS26340 at 5452.885 kb on - strand, within BWI76_RS26340 at 5452.951 kb on + strand, within BWI76_RS26340 at 5452.992 kb on + strand, within BWI76_RS26340 at 5453.083 kb on - strand, within BWI76_RS26340 at 5453.341 kb on + strand at 5453.394 kb on + strand at 5453.556 kb on - strand, within BWI76_RS26345 at 5453.622 kb on - strand, within BWI76_RS26345 at 5453.889 kb on - strand, within BWI76_RS26345 at 5453.955 kb on + strand, within BWI76_RS26345 at 5453.973 kb on - strand, within BWI76_RS26345 at 5454.161 kb on - strand, within BWI76_RS26345 at 5454.243 kb on - strand at 5454.253 kb on - strand at 5454.292 kb on + strand at 5454.292 kb on + strand at 5454.370 kb on + strand at 5454.609 kb on + strand, within BWI76_RS26350 at 5454.639 kb on + strand, within BWI76_RS26350 at 5454.691 kb on + strand, within BWI76_RS26350 at 5454.691 kb on + strand, within BWI76_RS26350 at 5454.691 kb on + strand, within BWI76_RS26350 at 5454.711 kb on + strand, within BWI76_RS26350 at 5454.837 kb on + strand, within BWI76_RS26350 at 5454.926 kb on - strand, within BWI76_RS26350 at 5455.090 kb on - strand, within BWI76_RS26350 at 5455.170 kb on - strand, within BWI76_RS26350 at 5455.229 kb on + strand, within BWI76_RS26350 at 5455.248 kb on + strand, within BWI76_RS26350
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,452,518 - BWI76_RS26340 0.33 -0.2 5,452,548 + -0.5 5,452,574 + BWI76_RS26340 0.38 +0.9 5,452,712 - BWI76_RS26340 0.48 -1.0 5,452,712 - BWI76_RS26340 0.48 +0.3 5,452,844 + BWI76_RS26340 0.59 +0.3 5,452,885 - BWI76_RS26340 0.62 +0.2 5,452,951 + BWI76_RS26340 0.67 +0.4 5,452,992 + BWI76_RS26340 0.70 +2.7 5,453,083 - BWI76_RS26340 0.77 -0.4 5,453,341 + -1.9 5,453,394 + +0.4 5,453,556 - BWI76_RS26345 0.20 -0.0 5,453,622 - BWI76_RS26345 0.27 -0.5 5,453,889 - BWI76_RS26345 0.56 +0.9 5,453,955 + BWI76_RS26345 0.63 -2.6 5,453,973 - BWI76_RS26345 0.65 -1.7 5,454,161 - BWI76_RS26345 0.85 +1.1 5,454,243 - -0.4 5,454,253 - +0.7 5,454,292 + +2.1 5,454,292 + -0.5 5,454,370 + -1.5 5,454,609 + BWI76_RS26350 0.23 -0.5 5,454,639 + BWI76_RS26350 0.25 -1.9 5,454,691 + BWI76_RS26350 0.30 +1.2 5,454,691 + BWI76_RS26350 0.30 +0.2 5,454,691 + BWI76_RS26350 0.30 +0.3 5,454,711 + BWI76_RS26350 0.32 +0.1 5,454,837 + BWI76_RS26350 0.43 +0.8 5,454,926 - BWI76_RS26350 0.51 +0.3 5,455,090 - BWI76_RS26350 0.66 +2.8 5,455,170 - BWI76_RS26350 0.73 -2.6 5,455,229 + BWI76_RS26350 0.79 +1.6 5,455,248 + BWI76_RS26350 0.80 +1.4
Or see this region's nucleotide sequence