Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24665 and BWI76_RS24670 are separated by 37 nucleotides BWI76_RS24670 and BWI76_RS24675 are separated by 219 nucleotides
BWI76_RS24665: BWI76_RS24665 - LsrR family transcriptional regulator, at 5,140,733 to 5,141,704
_RS24665
BWI76_RS24670: BWI76_RS24670 - autoinducer-2 kinase, at 5,141,742 to 5,143,334
_RS24670
BWI76_RS24675: BWI76_RS24675 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 5,143,554 to 5,145,575
_RS24675
Position (kb)
5141
5142
5143
5144 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5140.846 kb on + strand, within BWI76_RS24665 at 5140.846 kb on - strand, within BWI76_RS24665 at 5141.088 kb on + strand, within BWI76_RS24665 at 5141.126 kb on + strand, within BWI76_RS24665 at 5141.143 kb on + strand, within BWI76_RS24665 at 5141.438 kb on + strand, within BWI76_RS24665 at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.707 kb on + strand at 5141.948 kb on - strand, within BWI76_RS24670 at 5142.253 kb on - strand, within BWI76_RS24670 at 5142.313 kb on - strand, within BWI76_RS24670 at 5142.335 kb on + strand, within BWI76_RS24670 at 5142.541 kb on + strand, within BWI76_RS24670 at 5142.859 kb on - strand, within BWI76_RS24670 at 5142.885 kb on + strand, within BWI76_RS24670 at 5143.057 kb on + strand, within BWI76_RS24670 at 5143.121 kb on + strand, within BWI76_RS24670 at 5143.329 kb on + strand at 5143.329 kb on + strand at 5143.337 kb on - strand at 5143.337 kb on - strand at 5143.337 kb on - strand at 5143.337 kb on - strand at 5143.776 kb on + strand, within BWI76_RS24675 at 5143.784 kb on - strand, within BWI76_RS24675 at 5143.786 kb on - strand, within BWI76_RS24675 at 5143.836 kb on - strand, within BWI76_RS24675 at 5144.150 kb on + strand, within BWI76_RS24675 at 5144.158 kb on - strand, within BWI76_RS24675
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,140,846 + BWI76_RS24665 0.12 +0.3 5,140,846 - BWI76_RS24665 0.12 -2.1 5,141,088 + BWI76_RS24665 0.37 +0.2 5,141,126 + BWI76_RS24665 0.40 +0.1 5,141,143 + BWI76_RS24665 0.42 -0.2 5,141,438 + BWI76_RS24665 0.73 +0.8 5,141,707 + -2.8 5,141,707 + -0.0 5,141,707 + -0.2 5,141,948 - BWI76_RS24670 0.13 +0.2 5,142,253 - BWI76_RS24670 0.32 +0.1 5,142,313 - BWI76_RS24670 0.36 +2.4 5,142,335 + BWI76_RS24670 0.37 +0.6 5,142,541 + BWI76_RS24670 0.50 +1.6 5,142,859 - BWI76_RS24670 0.70 +0.5 5,142,885 + BWI76_RS24670 0.72 +0.5 5,143,057 + BWI76_RS24670 0.83 +0.6 5,143,121 + BWI76_RS24670 0.87 +0.2 5,143,329 + -0.3 5,143,329 + +0.2 5,143,337 - +0.3 5,143,337 - +0.4 5,143,337 - -0.4 5,143,337 - +0.3 5,143,776 + BWI76_RS24675 0.11 +1.1 5,143,784 - BWI76_RS24675 0.11 +0.3 5,143,786 - BWI76_RS24675 0.11 +0.2 5,143,836 - BWI76_RS24675 0.14 -0.2 5,144,150 + BWI76_RS24675 0.29 -0.8 5,144,158 - BWI76_RS24675 0.30 -0.2
Or see this region's nucleotide sequence