Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21865

Experiment: RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Sinorhizobium meliloti 1021 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
4,568,031	+				+1.0
4,568,038	+				-0.0
4,568,038	+				-0.1
4,568,038	+				+0.8
4,568,043	+				-3.3
4,568,043	+				-1.8
4,568,043	+				-0.9
4,568,043	+				+0.5
4,568,046	-				+0.1
4,568,046	-				-0.0
4,568,046	-				-3.3
4,568,051	-				+1.2
4,568,051	-				-0.8
4,568,053	+				-0.4
4,568,053	+				-0.3
4,568,053	+				-0.6
4,568,053	+				-3.2
4,568,054	+				-2.5
4,568,054	+				-0.6
4,568,061	-				-2.1
4,568,061	-				-4.5
4,568,061	-				-0.2
4,568,061	-				-1.7
4,568,062	-				-0.0
4,568,062	-				-2.6
4,568,064	+				-0.6
4,568,066	-				+0.2
4,568,071	-				-2.6
4,568,085	-				-1.0
4,568,103	+				-2.9
4,568,104	+				-1.4
4,568,104	+				-0.0
4,568,147	-				+0.6
4,568,149	+				-2.0
4,568,200	+				-1.0
4,568,208	-				-0.4
4,568,252	+				-0.9
4,568,258	-				-2.3
4,568,343	-				-0.0
4,568,361	-				-0.5
4,568,378	+				-1.8
4,568,442	+				+0.8
4,568,484	+				+0.4
4,568,489	+				-3.9
4,568,489	+				+0.3
4,568,489	+				-0.6
4,568,497	-				+0.3
4,568,501	+				-0.1
4,568,501	+				-2.8
4,568,502	-				+0.2
4,568,528	-				-2.6
4,568,537	-				-0.2
4,568,537	-				-0.0
4,568,537	-				-0.0
4,568,541	-				-0.7
4,568,617	+		BWI76_RS21860	0.29	-3.6
4,568,617	+		BWI76_RS21860	0.29	-0.3
4,568,625	-		BWI76_RS21860	0.32	-0.4
4,568,625	-		BWI76_RS21860	0.32	-0.5
4,568,631	+				+1.0
4,568,631	+		BWI76_RS21860	0.35	-0.0
4,568,639	-		BWI76_RS21860	0.38	+0.5
4,568,639	-		BWI76_RS21860	0.38	-0.0
4,568,639	-		BWI76_RS21860	0.38	-1.6
4,568,639	-		BWI76_RS21860	0.38	-1.6
4,568,639	-		BWI76_RS21860	0.38	+0.5
4,568,639	-		BWI76_RS21860	0.38	-0.8
4,568,652	-		BWI76_RS21860	0.43	+0.5
4,568,658	+		BWI76_RS21860	0.45	+0.6
4,568,658	-		BWI76_RS21860	0.45	-1.0
4,568,664	+		BWI76_RS21860	0.47	-1.8
4,568,665	+		BWI76_RS21860	0.48	+0.8
4,568,666	-		BWI76_RS21860	0.48	-1.1
4,568,666	-		BWI76_RS21860	0.48	-1.8
4,568,666	-		BWI76_RS21860	0.48	+0.5
4,568,668	-		BWI76_RS21860	0.49	-2.7
4,568,672	-		BWI76_RS21860	0.51	+0.6
4,568,673	-		BWI76_RS21860	0.51	-0.6
4,568,674	-		BWI76_RS21860	0.51	-1.6
4,568,682	+		BWI76_RS21860	0.55	+1.0
4,568,698	-		BWI76_RS21860	0.61	+0.1
4,568,702	+		BWI76_RS21860	0.62	-0.6
4,568,724	-		BWI76_RS21860	0.71	+0.8
4,568,726	+		BWI76_RS21860	0.72	-1.5
4,568,727	-		BWI76_RS21860	0.72	+0.3
4,568,730	+		BWI76_RS21860	0.73	-2.2
4,568,730	+		BWI76_RS21860	0.73	+0.3
4,568,731	+		BWI76_RS21860	0.74	+0.3
4,568,731	+		BWI76_RS21860	0.74	+0.2
4,568,731	+		BWI76_RS21860	0.74	-0.7
4,568,733	-		BWI76_RS21860	0.75	-0.8
4,568,738	+		BWI76_RS21860	0.76	+0.4
4,568,739	-		BWI76_RS21860	0.77	-0.3
4,568,739	-		BWI76_RS21860	0.77	-3.3
4,568,739	-		BWI76_RS21860	0.77	-1.1
4,568,739	-		BWI76_RS21860	0.77	-1.1
4,568,739	-		BWI76_RS21860	0.77	-1.0
4,568,739	-		BWI76_RS21860	0.77	-0.2
4,568,739	-		BWI76_RS21860	0.77	-0.4
4,568,739	-		BWI76_RS21860	0.77	-0.3
4,568,739	-		BWI76_RS21860	0.77	+0.8
4,568,752	+		BWI76_RS21860	0.82	-0.4
4,568,753	-		BWI76_RS21860	0.82	+0.7
4,568,755	+		BWI76_RS21860	0.83	+0.1
4,568,760	-		BWI76_RS21860	0.85	-0.0
4,568,776	-				-1.4
4,568,779	+				+0.4
4,568,779	+				-0.7
4,568,786	-				-1.6
4,568,786	-				-0.1
4,568,787	-				-0.0
4,568,787	-				-0.6
4,568,792	+				+0.7
4,568,792	+				-0.1
4,568,797	+				+0.8
4,568,799	-				-0.0
4,568,800	-				-3.2
4,568,800	-				+1.5
4,568,800	-				-3.5
4,568,801	-				+1.4
4,568,807	+				-1.0
4,568,807	+				-0.4
4,568,807	+				-0.3
4,568,815	-				-0.5
4,568,815	-				+0.3
4,568,815	-				-0.0
4,568,815	-				+1.1
4,568,817	-				+0.3
4,568,817	-				+0.5
4,568,817	-				+0.2
4,568,856	-				+0.7
4,568,874	+				+1.0
4,568,887	+				-1.3
4,568,887	+				-1.5
4,568,894	+				+0.5
4,568,895	-				-0.3
4,568,902	-				-0.8
4,568,905	+				-0.7
4,568,913	-				-2.6
4,568,929	+				+1.0
4,568,949	+				+1.4
4,568,950	+				+0.3
4,568,950	+				-1.6
4,568,958	-				-2.0
4,568,964	+				-1.1
4,568,965	+				-0.0
4,568,965	-				+1.0
4,568,978	+				+1.0
4,568,978	+				-3.3
4,568,978	-				+0.3
4,568,985	+				-1.3
4,568,986	-				+0.5
4,568,994	+				+1.1
4,568,999	+				-1.6
4,569,002	-				-0.0
4,569,002	-				-3.2
4,569,022	+				+0.7
4,569,024	-				-2.2
4,569,028	-				-2.0
4,569,030	+				-1.0
4,569,030	+				+0.1
4,569,030	-				-0.0
4,569,030	-				-1.0
4,569,038	-				-1.5
4,569,038	-				-1.1
4,569,038	-				-0.6
4,569,038	-				+1.0
4,569,038	-				+0.2
4,569,038	-				-0.0
4,569,038	-				-1.0
4,569,038	-				+0.7
4,569,038	-				-0.4
4,569,064	-				+1.0
4,569,067	-				-1.1
4,569,070	+				-1.3
4,569,102	-		BWI76_RS21865	0.10	-3.5
4,569,173	+		BWI76_RS21865	0.15	-0.2
4,569,187	+		BWI76_RS21865	0.16	-0.0
4,569,187	+		BWI76_RS21865	0.16	-1.4
4,569,195	-		BWI76_RS21865	0.16	-1.6
4,569,195	-		BWI76_RS21865	0.16	-0.1
4,569,195	-		BWI76_RS21865	0.16	-2.2
4,569,306	+				+1.0
4,569,360	+		BWI76_RS21865	0.26	+1.0
4,569,393	-		BWI76_RS21865	0.28	-1.5
4,569,396	+		BWI76_RS21865	0.29	+1.0
4,569,399	-		BWI76_RS21865	0.29	+0.7
4,569,404	+		BWI76_RS21865	0.29	-0.0
4,569,405	+				-0.6
4,569,424	-		BWI76_RS21865	0.30	+0.8
4,569,445	+		BWI76_RS21865	0.32	+2.6
4,569,450	+		BWI76_RS21865	0.32	-1.3
4,569,467	+		BWI76_RS21865	0.33	-1.5
4,569,510	+		BWI76_RS21865	0.36	+0.6
4,569,510	+		BWI76_RS21865	0.36	-2.0
4,569,510	+		BWI76_RS21865	0.36	-3.9
4,569,510	+		BWI76_RS21865	0.36	-1.0
4,569,510	+		BWI76_RS21865	0.36	-2.0
4,569,510	+		BWI76_RS21865	0.36	-1.8
4,569,518	-		BWI76_RS21865	0.36	-0.4
4,569,518	-		BWI76_RS21865	0.36	-1.3
4,569,518	-		BWI76_RS21865	0.36	-3.6
4,569,518	-		BWI76_RS21865	0.36	+0.3
4,569,518	-		BWI76_RS21865	0.36	-1.6
4,569,518	-		BWI76_RS21865	0.36	+0.4
4,569,518	-				-2.5
4,569,518	-		BWI76_RS21865	0.36	-1.1
4,569,518	-		BWI76_RS21865	0.36	-0.0
4,569,518	-		BWI76_RS21865	0.36	+1.1
4,569,519	-		BWI76_RS21865	0.36	-1.3
4,569,532	+		BWI76_RS21865	0.37	-3.1
4,569,532	+		BWI76_RS21865	0.37	+0.5
4,569,541	+		BWI76_RS21865	0.38	-3.6
4,569,541	+		BWI76_RS21865	0.38	-1.6
4,569,541	+		BWI76_RS21865	0.38	-1.5
4,569,549	-		BWI76_RS21865	0.38	+0.8
4,569,549	-		BWI76_RS21865	0.38	-3.1
4,569,549	-		BWI76_RS21865	0.38	-0.0
4,569,553	-		BWI76_RS21865	0.38	-0.2
4,569,617	-		BWI76_RS21865	0.42	+0.2
4,569,622	-		BWI76_RS21865	0.43	+1.0
4,569,622	-		BWI76_RS21865	0.43	-0.6
4,569,626	+		BWI76_RS21865	0.43	+1.0
4,569,631	-		BWI76_RS21865	0.43	-0.6
4,569,631	-		BWI76_RS21865	0.43	-2.6
4,569,633	+		BWI76_RS21865	0.43	-1.8
4,569,633	+		BWI76_RS21865	0.43	-0.4
4,569,633	+		BWI76_RS21865	0.43	-0.1
4,569,638	+		BWI76_RS21865	0.44	-1.7
4,569,639	-		BWI76_RS21865	0.44	+0.3
4,569,641	-		BWI76_RS21865	0.44	-0.7
4,569,652	-		BWI76_RS21865	0.44	+0.7
4,569,652	-		BWI76_RS21865	0.44	+1.0
4,569,652	-		BWI76_RS21865	0.44	-3.5
4,569,655	+		BWI76_RS21865	0.45	-1.3
4,569,657	+		BWI76_RS21865	0.45	+1.2
4,569,663	-		BWI76_RS21865	0.45	+1.5
4,569,663	-		BWI76_RS21865	0.45	+0.0
4,569,676	-		BWI76_RS21865	0.46	-3.0
4,569,680	+		BWI76_RS21865	0.46	+1.0
4,569,680	+		BWI76_RS21865	0.46	-3.6
4,569,680	+		BWI76_RS21865	0.46	-2.6
4,569,688	-		BWI76_RS21865	0.47	-1.1
4,569,688	-		BWI76_RS21865	0.47	-0.7
4,569,701	+		BWI76_RS21865	0.48	-0.1
4,569,709	-		BWI76_RS21865	0.48	+1.6
4,569,737	-		BWI76_RS21865	0.50	-0.9
4,569,740	+		BWI76_RS21865	0.50	-1.5
4,569,843	-		BWI76_RS21865	0.56	-2.7
4,569,918	+		BWI76_RS21865	0.61	-1.3
4,569,980	+		BWI76_RS21865	0.65	-1.4
4,569,998	-		BWI76_RS21865	0.66	+0.5
4,569,999	-		BWI76_RS21865	0.66	-1.0
4,570,018	-		BWI76_RS21865	0.67	+0.5
4,570,222	-		BWI76_RS21865	0.80	-1.8
4,570,234	-		BWI76_RS21865	0.81	-3.0
4,570,234	-		BWI76_RS21865	0.81	+0.1
4,570,234	-		BWI76_RS21865	0.81	+0.1
4,570,257	-		BWI76_RS21865	0.82	-0.6
4,570,264	-		BWI76_RS21865	0.83	+1.4
4,570,305	+		BWI76_RS21865	0.85	-0.5
4,570,383	-				+0.6
4,570,387	+				-2.0
4,570,389	-				-3.4
4,570,389	-				-1.2
4,570,436	+				+1.3
4,570,439	+				-0.4
4,570,441	-				-0.1
4,570,445	+				+1.0
4,570,451	-				+1.0
4,570,459	-				-0.3
4,570,462	-				-2.3
4,570,472	-				-1.6
4,570,540	+				-1.1
4,570,550	+				-1.6
4,570,664	+		BWI76_RS21870	0.31	+3.3
4,570,664	+		BWI76_RS21870	0.31	-2.5
4,570,664	+		BWI76_RS21870	0.31	-2.0
4,570,664	+		BWI76_RS21870	0.31	-2.2
4,570,664	+		BWI76_RS21870	0.31	+0.2
4,570,664	+		BWI76_RS21870	0.31	-0.4
4,570,672	-		BWI76_RS21870	0.33	-0.6
4,570,682	-		BWI76_RS21870	0.35	+0.7
4,570,694	-		BWI76_RS21870	0.38	-1.3
4,570,699	+		BWI76_RS21870	0.40	-1.6
4,570,707	-		BWI76_RS21870	0.41	+1.0
4,570,707	-		BWI76_RS21870	0.41	-0.6
4,570,731	-		BWI76_RS21870	0.47	+0.2
4,570,793	-		BWI76_RS21870	0.63	-0.0
4,570,807	+		BWI76_RS21870	0.66	-2.3
4,570,807	+		BWI76_RS21870	0.66	-0.7
4,570,812	+		BWI76_RS21870	0.67	-0.0
4,570,820	-		BWI76_RS21870	0.69	-0.0
4,571,023	+				+0.6
4,571,091	+				-0.0
4,571,091	+				-1.3
4,571,091	+				-0.6
4,571,164	+				-2.6
4,571,236	+				-1.4
4,571,236	+				+0.4
4,571,244	-				+0.4
4,571,248	+				-1.6
4,571,248	+				+0.3
4,571,248	+				+0.2
4,571,248	+				+0.3
4,571,248	+				+0.7
4,571,252	+				-4.1
4,571,257	+				+0.3
4,571,257	+				-2.6
4,571,257	+				-1.0
4,571,265	-				+0.4
4,571,265	-				-3.2
4,571,265	-				+1.0
4,571,274	-				-0.3
4,571,274	-				-0.6
4,571,275	-				+1.0
4,571,277	-				+0.2
4,571,293	+				-0.6
4,571,294	+				-0.9
4,571,303	+				+0.9
4,571,309	+				-0.6
4,571,310	-				-0.5
4,571,311	-				-1.5
4,571,311	-				-0.0
4,571,317	-				+0.7
4,571,334	-		BWI76_RS21875	0.10	-0.2
4,571,396	+		BWI76_RS21875	0.17	+0.9
4,571,401	+		BWI76_RS21875	0.18	-0.6
4,571,407	+		BWI76_RS21875	0.18	+0.7
4,571,453	+		BWI76_RS21875	0.23	-0.9
4,571,460	-		BWI76_RS21875	0.24	+0.4
4,571,491	+		BWI76_RS21875	0.27	-2.3