Strain Fitness in Sinorhizobium meliloti 1021 around SMc03018

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03016 and SMc03017 are separated by 8 nucleotidesSMc03017 and SMc03018 overlap by 4 nucleotidesSMc03018 and SMc03019 are separated by 211 nucleotides SMc03016: SMc03016 - transcriptional regulator, at 714,838 to 715,578 SMc03016 SMc03017: SMc03017 - hypothetical protein, at 715,587 to 716,033 SMc03017 SMc03018: SMc03018 - flagellar biosynthesis protein FlhB, at 716,030 to 717,112 SMc03018 SMc03019: SMc03019 - flagellar motor switch protein G, at 717,324 to 718,361 SMc03019 Position (kb) 716 717 718Strain fitness (log2 ratio) -1 0 1 2at 715.261 kb on + strand, within SMc03016at 715.262 kb on - strand, within SMc03016at 715.262 kb on - strand, within SMc03016at 715.283 kb on - strand, within SMc03016at 715.437 kb on + strand, within SMc03016at 715.437 kb on + strand, within SMc03016at 715.492 kb on + strand, within SMc03016at 715.492 kb on + strand, within SMc03016at 715.493 kb on - strand, within SMc03016at 715.493 kb on - strand, within SMc03016at 715.493 kb on - strand, within SMc03016at 715.567 kb on + strandat 715.568 kb on - strandat 715.569 kb on + strandat 715.570 kb on - strandat 715.570 kb on - strandat 715.570 kb on - strandat 715.659 kb on - strand, within SMc03017at 715.722 kb on - strand, within SMc03017at 715.817 kb on + strand, within SMc03017at 715.818 kb on - strandat 715.819 kb on + strand, within SMc03017at 715.820 kb on - strand, within SMc03017at 715.820 kb on - strand, within SMc03017at 715.861 kb on + strand, within SMc03017at 715.861 kb on + strand, within SMc03017at 715.861 kb on + strand, within SMc03017at 715.862 kb on - strand, within SMc03017at 715.903 kb on + strand, within SMc03017at 715.958 kb on - strand, within SMc03017at 715.990 kb on - strandat 715.990 kb on - strandat 716.065 kb on - strandat 716.233 kb on + strand, within SMc03018at 716.234 kb on - strand, within SMc03018at 716.271 kb on + strand, within SMc03018at 716.272 kb on - strand, within SMc03018at 716.272 kb on - strand, within SMc03018at 716.282 kb on + strand, within SMc03018at 716.290 kb on - strand, within SMc03018at 716.457 kb on + strand, within SMc03018at 716.458 kb on - strand, within SMc03018at 716.604 kb on + strand, within SMc03018at 716.649 kb on - strand, within SMc03018at 716.694 kb on + strand, within SMc03018at 716.695 kb on - strand, within SMc03018at 716.695 kb on - strand, within SMc03018at 716.887 kb on + strand, within SMc03018at 717.085 kb on + strandat 717.303 kb on + strandat 717.303 kb on + strandat 717.304 kb on - strandat 717.305 kb on + strandat 717.306 kb on - strandat 717.624 kb on + strand, within SMc03019at 717.625 kb on - strand, within SMc03019at 717.625 kb on - strand, within SMc03019at 717.625 kb on - strand, within SMc03019at 717.925 kb on + strand, within SMc03019at 717.926 kb on - strand, within SMc03019

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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715,261 + SMc03016 0.57 +0.3
715,262 - SMc03016 0.57 +0.8
715,262 - SMc03016 0.57 +0.5
715,283 - SMc03016 0.60 -0.0
715,437 + SMc03016 0.81 -0.1
715,437 + SMc03016 0.81 -0.1
715,492 + SMc03016 0.88 +0.7
715,492 + SMc03016 0.88 +0.9
715,493 - SMc03016 0.88 +0.4
715,493 - SMc03016 0.88 +0.6
715,493 - SMc03016 0.88 +0.7
715,567 + +0.4
715,568 - +0.1
715,569 + -0.1
715,570 - +0.2
715,570 - +0.2
715,570 - -0.6
715,659 - SMc03017 0.16 -0.2
715,722 - SMc03017 0.30 -0.2
715,817 + SMc03017 0.51 -0.2
715,818 - +1.9
715,819 + SMc03017 0.52 -0.4
715,820 - SMc03017 0.52 -0.8
715,820 - SMc03017 0.52 -0.7
715,861 + SMc03017 0.61 -0.4
715,861 + SMc03017 0.61 -0.3
715,861 + SMc03017 0.61 -1.1
715,862 - SMc03017 0.62 -0.4
715,903 + SMc03017 0.71 -0.8
715,958 - SMc03017 0.83 -0.2
715,990 - -1.4
715,990 - -0.3
716,065 - +0.2
716,233 + SMc03018 0.19 +0.6
716,234 - SMc03018 0.19 -0.1
716,271 + SMc03018 0.22 -0.1
716,272 - SMc03018 0.22 -0.2
716,272 - SMc03018 0.22 -0.4
716,282 + SMc03018 0.23 +0.2
716,290 - SMc03018 0.24 -0.1
716,457 + SMc03018 0.39 +0.1
716,458 - SMc03018 0.40 +0.4
716,604 + SMc03018 0.53 -0.2
716,649 - SMc03018 0.57 +0.2
716,694 + SMc03018 0.61 -1.0
716,695 - SMc03018 0.61 +0.3
716,695 - SMc03018 0.61 -0.7
716,887 + SMc03018 0.79 -0.2
717,085 + -0.4
717,303 + +0.0
717,303 + +0.6
717,304 - -0.0
717,305 + +0.4
717,306 - -0.4
717,624 + SMc03019 0.29 +0.3
717,625 - SMc03019 0.29 -0.3
717,625 - SMc03019 0.29 -0.2
717,625 - SMc03019 0.29 +0.0
717,925 + SMc03019 0.58 -0.3
717,926 - SMc03019 0.58 -0.3

Or see this region's nucleotide sequence