Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02651 and SMc02650 are separated by 12 nucleotides SMc02650 and SMc02649 overlap by 8 nucleotides SMc02649 and SMc02648 overlap by 4 nucleotides SMc02648 and SMc02647 overlap by 1 nucleotides
SMc02651: SMc02651 - GTP-binding protein Era, at 1,170,390 to 1,171,331
SMc02651
SMc02650: SMc02650 - hypothetical protein, at 1,171,344 to 1,172,069
SMc02650
SMc02649: SMc02649 - arsenate reductase, at 1,172,062 to 1,172,484
SMc02649
SMc02648: SMc02648 - transport transmembrane protein, at 1,172,481 to 1,173,182
SMc02648
SMc02647: SMc02647 - transcriptional regulator, at 1,173,182 to 1,173,595
SMc02647
Position (kb)
1172
1173 Strain fitness (log2 ratio)
-1
0
1 at 1171.329 kb on + strand at 1171.420 kb on + strand, within SMc02650 at 1171.489 kb on + strand, within SMc02650 at 1171.489 kb on + strand, within SMc02650 at 1171.492 kb on + strand, within SMc02650 at 1171.493 kb on - strand, within SMc02650 at 1171.493 kb on - strand, within SMc02650 at 1171.762 kb on - strand, within SMc02650 at 1171.924 kb on + strand, within SMc02650 at 1171.924 kb on + strand, within SMc02650 at 1171.924 kb on + strand, within SMc02650 at 1171.925 kb on - strand, within SMc02650 at 1171.925 kb on - strand, within SMc02650 at 1171.925 kb on - strand, within SMc02650 at 1171.925 kb on - strand, within SMc02650 at 1171.948 kb on + strand, within SMc02650 at 1171.948 kb on + strand, within SMc02650 at 1172.345 kb on - strand, within SMc02649 at 1172.422 kb on + strand, within SMc02649 at 1172.423 kb on - strand, within SMc02649 at 1172.463 kb on + strand at 1172.464 kb on - strand at 1172.464 kb on - strand at 1172.468 kb on + strand at 1172.469 kb on - strand at 1172.469 kb on - strand at 1172.469 kb on - strand at 1172.693 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.708 kb on - strand, within SMc02648 at 1172.761 kb on - strand, within SMc02648 at 1172.761 kb on - strand, within SMc02648 at 1172.915 kb on - strand, within SMc02648 at 1172.915 kb on - strand, within SMc02648 at 1172.915 kb on - strand, within SMc02648 at 1172.936 kb on + strand, within SMc02648 at 1172.936 kb on + strand, within SMc02648 at 1172.937 kb on - strand, within SMc02648 at 1173.080 kb on + strand, within SMc02648 at 1173.378 kb on + strand, within SMc02647
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 1,171,329 + -0.4 1,171,420 + SMc02650 0.10 -0.4 1,171,489 + SMc02650 0.20 -0.1 1,171,489 + SMc02650 0.20 -0.2 1,171,492 + SMc02650 0.20 +0.6 1,171,493 - SMc02650 0.21 -0.3 1,171,493 - SMc02650 0.21 -0.5 1,171,762 - SMc02650 0.58 -0.2 1,171,924 + SMc02650 0.80 -0.2 1,171,924 + SMc02650 0.80 +0.4 1,171,924 + SMc02650 0.80 -0.9 1,171,925 - SMc02650 0.80 -0.2 1,171,925 - SMc02650 0.80 +0.9 1,171,925 - SMc02650 0.80 -0.2 1,171,925 - SMc02650 0.80 +0.7 1,171,948 + SMc02650 0.83 +0.7 1,171,948 + SMc02650 0.83 -0.1 1,172,345 - SMc02649 0.67 +0.9 1,172,422 + SMc02649 0.85 +0.2 1,172,423 - SMc02649 0.85 +0.1 1,172,463 + -0.2 1,172,464 - -0.1 1,172,464 - +0.4 1,172,468 + -0.2 1,172,469 - +0.1 1,172,469 - +0.2 1,172,469 - +0.4 1,172,693 - SMc02648 0.30 +1.4 1,172,708 - SMc02648 0.32 -0.2 1,172,708 - SMc02648 0.32 -0.1 1,172,708 - SMc02648 0.32 -0.2 1,172,708 - SMc02648 0.32 +0.1 1,172,708 - SMc02648 0.32 -0.2 1,172,761 - SMc02648 0.40 -0.2 1,172,761 - SMc02648 0.40 +0.4 1,172,915 - SMc02648 0.62 +0.3 1,172,915 - SMc02648 0.62 +0.1 1,172,915 - SMc02648 0.62 +0.3 1,172,936 + SMc02648 0.65 +0.4 1,172,936 + SMc02648 0.65 +0.0 1,172,937 - SMc02648 0.65 -0.2 1,173,080 + SMc02648 0.85 +0.0 1,173,378 + SMc02647 0.47 +0.0
Or see this region's nucleotide sequence