Strain Fitness in Sinorhizobium meliloti 1021 around SMc02649

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02651 and SMc02650 are separated by 12 nucleotidesSMc02650 and SMc02649 overlap by 8 nucleotidesSMc02649 and SMc02648 overlap by 4 nucleotidesSMc02648 and SMc02647 overlap by 1 nucleotides SMc02651: SMc02651 - GTP-binding protein Era, at 1,170,390 to 1,171,331 SMc02651 SMc02650: SMc02650 - hypothetical protein, at 1,171,344 to 1,172,069 SMc02650 SMc02649: SMc02649 - arsenate reductase, at 1,172,062 to 1,172,484 SMc02649 SMc02648: SMc02648 - transport transmembrane protein, at 1,172,481 to 1,173,182 SMc02648 SMc02647: SMc02647 - transcriptional regulator, at 1,173,182 to 1,173,595 SMc02647 Position (kb) 1172 1173Strain fitness (log2 ratio) -1 0 1at 1171.329 kb on + strandat 1171.420 kb on + strand, within SMc02650at 1171.489 kb on + strand, within SMc02650at 1171.489 kb on + strand, within SMc02650at 1171.492 kb on + strand, within SMc02650at 1171.493 kb on - strand, within SMc02650at 1171.493 kb on - strand, within SMc02650at 1171.762 kb on - strand, within SMc02650at 1171.924 kb on + strand, within SMc02650at 1171.924 kb on + strand, within SMc02650at 1171.924 kb on + strand, within SMc02650at 1171.925 kb on - strand, within SMc02650at 1171.925 kb on - strand, within SMc02650at 1171.925 kb on - strand, within SMc02650at 1171.925 kb on - strand, within SMc02650at 1171.948 kb on + strand, within SMc02650at 1171.948 kb on + strand, within SMc02650at 1172.345 kb on - strand, within SMc02649at 1172.422 kb on + strand, within SMc02649at 1172.423 kb on - strand, within SMc02649at 1172.463 kb on + strandat 1172.464 kb on - strandat 1172.464 kb on - strandat 1172.468 kb on + strandat 1172.469 kb on - strandat 1172.469 kb on - strandat 1172.469 kb on - strandat 1172.693 kb on - strand, within SMc02648at 1172.708 kb on - strand, within SMc02648at 1172.708 kb on - strand, within SMc02648at 1172.708 kb on - strand, within SMc02648at 1172.708 kb on - strand, within SMc02648at 1172.708 kb on - strand, within SMc02648at 1172.761 kb on - strand, within SMc02648at 1172.761 kb on - strand, within SMc02648at 1172.915 kb on - strand, within SMc02648at 1172.915 kb on - strand, within SMc02648at 1172.915 kb on - strand, within SMc02648at 1172.936 kb on + strand, within SMc02648at 1172.936 kb on + strand, within SMc02648at 1172.937 kb on - strand, within SMc02648at 1173.080 kb on + strand, within SMc02648at 1173.378 kb on + strand, within SMc02647

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,171,329 + -0.4
1,171,420 + SMc02650 0.10 -0.4
1,171,489 + SMc02650 0.20 -0.1
1,171,489 + SMc02650 0.20 -0.2
1,171,492 + SMc02650 0.20 +0.6
1,171,493 - SMc02650 0.21 -0.3
1,171,493 - SMc02650 0.21 -0.5
1,171,762 - SMc02650 0.58 -0.2
1,171,924 + SMc02650 0.80 -0.2
1,171,924 + SMc02650 0.80 +0.4
1,171,924 + SMc02650 0.80 -0.9
1,171,925 - SMc02650 0.80 -0.2
1,171,925 - SMc02650 0.80 +0.9
1,171,925 - SMc02650 0.80 -0.2
1,171,925 - SMc02650 0.80 +0.7
1,171,948 + SMc02650 0.83 +0.7
1,171,948 + SMc02650 0.83 -0.1
1,172,345 - SMc02649 0.67 +0.9
1,172,422 + SMc02649 0.85 +0.2
1,172,423 - SMc02649 0.85 +0.1
1,172,463 + -0.2
1,172,464 - -0.1
1,172,464 - +0.4
1,172,468 + -0.2
1,172,469 - +0.1
1,172,469 - +0.2
1,172,469 - +0.4
1,172,693 - SMc02648 0.30 +1.4
1,172,708 - SMc02648 0.32 -0.2
1,172,708 - SMc02648 0.32 -0.1
1,172,708 - SMc02648 0.32 -0.2
1,172,708 - SMc02648 0.32 +0.1
1,172,708 - SMc02648 0.32 -0.2
1,172,761 - SMc02648 0.40 -0.2
1,172,761 - SMc02648 0.40 +0.4
1,172,915 - SMc02648 0.62 +0.3
1,172,915 - SMc02648 0.62 +0.1
1,172,915 - SMc02648 0.62 +0.3
1,172,936 + SMc02648 0.65 +0.4
1,172,936 + SMc02648 0.65 +0.0
1,172,937 - SMc02648 0.65 -0.2
1,173,080 + SMc02648 0.85 +0.0
1,173,378 + SMc02647 0.47 +0.0

Or see this region's nucleotide sequence