Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02187 and SMc02202 overlap by 11 nucleotides SMc02202 and SMc02201 are separated by 156 nucleotides
SMc02187: SMc02187 - integrase DNA protein, at 540,915 to 542,123
SMc02187
SMc02202: SMc02202 - hypothetical protein, at 542,113 to 542,955
SMc02202
SMc02201: SMc02201 - hypothetical protein, at 543,112 to 543,309
SMc02201
Position (kb) 543
544 Strain fitness (log2 ratio) -2
-1
0
1
2 at 542.227 kb on - strand, within SMc02202 at 542.258 kb on - strand, within SMc02202 at 542.258 kb on - strand, within SMc02202 at 542.284 kb on - strand, within SMc02202 at 542.323 kb on - strand, within SMc02202 at 542.354 kb on + strand, within SMc02202 at 542.355 kb on - strand, within SMc02202 at 542.414 kb on + strand, within SMc02202 at 542.414 kb on + strand, within SMc02202 at 542.414 kb on + strand, within SMc02202 at 542.415 kb on - strand, within SMc02202 at 542.572 kb on - strand, within SMc02202 at 542.605 kb on + strand, within SMc02202 at 542.606 kb on - strand, within SMc02202 at 542.607 kb on + strand, within SMc02202 at 542.607 kb on + strand, within SMc02202 at 542.607 kb on + strand, within SMc02202 at 542.608 kb on - strand, within SMc02202 at 542.608 kb on - strand, within SMc02202 at 542.629 kb on + strand, within SMc02202 at 542.637 kb on + strand, within SMc02202 at 542.691 kb on + strand, within SMc02202 at 542.692 kb on - strand, within SMc02202 at 542.743 kb on + strand, within SMc02202 at 542.743 kb on + strand, within SMc02202 at 542.744 kb on - strand, within SMc02202 at 542.954 kb on - strand at 543.049 kb on + strand at 543.136 kb on - strand, within SMc02201 at 543.167 kb on + strand, within SMc02201 at 543.168 kb on - strand, within SMc02201 at 543.168 kb on - strand, within SMc02201 at 543.308 kb on - strand at 543.374 kb on + strand at 543.375 kb on - strand at 543.437 kb on - strand at 543.456 kb on + strand at 543.482 kb on - strand at 543.492 kb on - strand at 543.511 kb on + strand at 543.512 kb on - strand at 543.512 kb on - strand at 543.512 kb on - strand at 543.512 kb on - strand at 543.562 kb on + strand at 543.562 kb on + strand at 543.562 kb on + strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.563 kb on - strand at 543.600 kb on + strand at 543.600 kb on + strand at 543.600 kb on + strand at 543.634 kb on + strand at 543.662 kb on + strand at 543.673 kb on - strand at 543.690 kb on + strand at 543.736 kb on + strand at 543.736 kb on + strand at 543.796 kb on + strand at 543.797 kb on - strand at 543.797 kb on - strand at 543.843 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.957 kb on + strand at 543.958 kb on - strand at 543.958 kb on - strand at 544.095 kb on + strand at 544.096 kb on - strand at 544.096 kb on - strand at 544.147 kb on + strand at 544.148 kb on - strand at 544.148 kb on - strand at 544.174 kb on + strand at 544.175 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 542,227 - SMc02202 0.14 +1.3 542,258 - SMc02202 0.17 +0.0 542,258 - SMc02202 0.17 +1.9 542,284 - SMc02202 0.20 -0.2 542,323 - SMc02202 0.25 +1.4 542,354 + SMc02202 0.29 +0.3 542,355 - SMc02202 0.29 +0.5 542,414 + SMc02202 0.36 -0.2 542,414 + SMc02202 0.36 +0.3 542,414 + SMc02202 0.36 +0.1 542,415 - SMc02202 0.36 -0.2 542,572 - SMc02202 0.54 -0.2 542,605 + SMc02202 0.58 +0.2 542,606 - SMc02202 0.58 -0.1 542,607 + SMc02202 0.59 +0.7 542,607 + SMc02202 0.59 -0.1 542,607 + SMc02202 0.59 -0.6 542,608 - SMc02202 0.59 -0.2 542,608 - SMc02202 0.59 -1.3 542,629 + SMc02202 0.61 +0.7 542,637 + SMc02202 0.62 -1.3 542,691 + SMc02202 0.69 +0.7 542,692 - SMc02202 0.69 +0.3 542,743 + SMc02202 0.75 -0.8 542,743 + SMc02202 0.75 +0.2 542,744 - SMc02202 0.75 -0.4 542,954 - +0.2 543,049 + +0.1 543,136 - SMc02201 0.12 -1.1 543,167 + SMc02201 0.28 +0.0 543,168 - SMc02201 0.28 +0.2 543,168 - SMc02201 0.28 -1.0 543,308 - +1.2 543,374 + -0.1 543,375 - +0.1 543,437 - -0.4 543,456 + +1.9 543,482 - -0.2 543,492 - +0.5 543,511 + +0.2 543,512 - +1.9 543,512 - -0.4 543,512 - -0.7 543,512 - +0.3 543,562 + -0.2 543,562 + -0.1 543,562 + +0.6 543,563 - -1.1 543,563 - -0.2 543,563 - -0.4 543,563 - -0.0 543,600 + -0.5 543,600 + -0.1 543,600 + -0.1 543,634 + +0.0 543,662 + +0.5 543,673 - -0.8 543,690 + +0.8 543,736 + -0.1 543,736 + -0.8 543,796 + +0.1 543,797 - -0.2 543,797 - +0.5 543,843 + -1.1 543,957 + -0.4 543,957 + +0.0 543,957 + -0.5 543,957 + +1.1 543,957 + -0.2 543,957 + -2.3 543,957 + -0.4 543,957 + -0.4 543,957 + -0.3 543,958 - +0.1 543,958 - -0.1 544,095 + -0.3 544,096 - +0.2 544,096 - +0.1 544,147 + -0.8 544,148 - -1.3 544,148 - -1.2 544,174 + +0.2 544,175 - +1.5
Or see this region's nucleotide sequence