Strain Fitness in Sinorhizobium meliloti 1021 around SMa0155

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0151 and SMa0155 are separated by 20 nucleotidesSMa0155 and SMa0157 are separated by 66 nucleotides SMa0151: SMa0151 - hypothetical protein, at 83,897 to 86,626 SMa0151 SMa0155: SMa0155 - hypothetical protein, at 86,647 to 87,216 SMa0155 SMa0157: SMa0157 - ABC transporter substrate-binding protein, at 87,283 to 88,287 SMa0157 Position (kb) 86 87 88Strain fitness (log2 ratio) -1 0 1 2at 85.935 kb on + strandat 85.935 kb on + strand, within SMa0151at 85.935 kb on + strand, within SMa0151at 85.935 kb on + strand, within SMa0151at 85.936 kb on - strand, within SMa0151at 85.936 kb on - strand, within SMa0151at 85.936 kb on - strand, within SMa0151at 85.940 kb on + strand, within SMa0151at 85.941 kb on - strand, within SMa0151at 85.941 kb on - strand, within SMa0151at 85.941 kb on - strand, within SMa0151at 85.941 kb on - strand, within SMa0151at 85.944 kb on + strand, within SMa0151at 85.944 kb on + strand, within SMa0151at 85.944 kb on + strand, within SMa0151at 85.944 kb on + strand, within SMa0151at 86.160 kb on + strand, within SMa0151at 86.344 kb on + strand, within SMa0151at 86.400 kb on + strandat 86.400 kb on + strandat 86.401 kb on - strandat 86.401 kb on - strandat 86.401 kb on - strandat 86.401 kb on - strandat 86.469 kb on + strandat 86.469 kb on + strandat 86.470 kb on - strandat 86.470 kb on - strandat 86.470 kb on - strandat 86.470 kb on - strandat 86.514 kb on + strandat 86.542 kb on - strandat 86.567 kb on + strandat 86.769 kb on - strand, within SMa0155at 87.020 kb on + strand, within SMa0155at 87.020 kb on + strand, within SMa0155at 87.021 kb on - strand, within SMa0155at 87.021 kb on - strand, within SMa0155at 87.097 kb on + strand, within SMa0155at 87.097 kb on + strand, within SMa0155at 87.098 kb on - strand, within SMa0155at 87.101 kb on + strand, within SMa0155at 87.101 kb on + strand, within SMa0155at 87.102 kb on - strand, within SMa0155at 87.102 kb on - strand, within SMa0155at 87.112 kb on - strand, within SMa0155at 87.203 kb on + strandat 87.285 kb on - strandat 87.285 kb on - strandat 87.285 kb on - strandat 87.285 kb on - strandat 87.386 kb on + strand, within SMa0157at 87.387 kb on - strand, within SMa0157at 87.387 kb on - strand, within SMa0157at 87.387 kb on - strand, within SMa0157at 87.431 kb on + strand, within SMa0157at 87.431 kb on + strand, within SMa0157at 87.432 kb on - strand, within SMa0157at 87.432 kb on - strand, within SMa0157at 87.432 kb on - strand, within SMa0157at 87.479 kb on + strand, within SMa0157at 87.480 kb on - strand, within SMa0157at 87.556 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.572 kb on + strand, within SMa0157at 87.573 kb on - strand, within SMa0157at 87.573 kb on - strand, within SMa0157at 87.573 kb on - strand, within SMa0157at 87.698 kb on + strand, within SMa0157at 87.895 kb on + strand, within SMa0157at 88.001 kb on + strand, within SMa0157at 88.001 kb on + strand, within SMa0157at 88.001 kb on + strand, within SMa0157

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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85,935 + +0.8
85,935 + SMa0151 0.75 -0.0
85,935 + SMa0151 0.75 -0.4
85,935 + SMa0151 0.75 -0.4
85,936 - SMa0151 0.75 +0.5
85,936 - SMa0151 0.75 +0.2
85,936 - SMa0151 0.75 +0.2
85,940 + SMa0151 0.75 -0.2
85,941 - SMa0151 0.75 -0.1
85,941 - SMa0151 0.75 -0.2
85,941 - SMa0151 0.75 -0.6
85,941 - SMa0151 0.75 -1.2
85,944 + SMa0151 0.75 +0.4
85,944 + SMa0151 0.75 +1.0
85,944 + SMa0151 0.75 -0.1
85,944 + SMa0151 0.75 -0.3
86,160 + SMa0151 0.83 +2.3
86,344 + SMa0151 0.90 +1.2
86,400 + +0.8
86,400 + -0.1
86,401 - -0.0
86,401 - -0.8
86,401 - +0.3
86,401 - -1.7
86,469 + +0.4
86,469 + -0.4
86,470 - -0.2
86,470 - -0.4
86,470 - -0.0
86,470 - +0.4
86,514 + -0.5
86,542 - -1.3
86,567 + +0.3
86,769 - SMa0155 0.21 -0.3
87,020 + SMa0155 0.65 +0.5
87,020 + SMa0155 0.65 +1.0
87,021 - SMa0155 0.66 -0.7
87,021 - SMa0155 0.66 +0.2
87,097 + SMa0155 0.79 +0.7
87,097 + SMa0155 0.79 +0.7
87,098 - SMa0155 0.79 +0.8
87,101 + SMa0155 0.80 -0.4
87,101 + SMa0155 0.80 +0.5
87,102 - SMa0155 0.80 -0.3
87,102 - SMa0155 0.80 -0.1
87,112 - SMa0155 0.82 +0.1
87,203 + -1.2
87,285 - +0.3
87,285 - +0.2
87,285 - -0.7
87,285 - +0.0
87,386 + SMa0157 0.10 -1.7
87,387 - SMa0157 0.10 +0.0
87,387 - SMa0157 0.10 -0.2
87,387 - SMa0157 0.10 -0.1
87,431 + SMa0157 0.15 +1.0
87,431 + SMa0157 0.15 +0.0
87,432 - SMa0157 0.15 -0.3
87,432 - SMa0157 0.15 -0.2
87,432 - SMa0157 0.15 +0.0
87,479 + SMa0157 0.20 +0.0
87,480 - SMa0157 0.20 -0.0
87,556 + SMa0157 0.27 -1.0
87,572 + SMa0157 0.29 +0.0
87,572 + SMa0157 0.29 -0.3
87,572 + SMa0157 0.29 +0.3
87,572 + SMa0157 0.29 +0.6
87,573 - SMa0157 0.29 +0.3
87,573 - SMa0157 0.29 -0.2
87,573 - SMa0157 0.29 +0.1
87,698 + SMa0157 0.41 -0.1
87,895 + SMa0157 0.61 +0.1
88,001 + SMa0157 0.71 -0.3
88,001 + SMa0157 0.71 +0.5
88,001 + SMa0157 0.71 -0.0

Or see this region's nucleotide sequence