Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS25910 and BWI76_RS25915 are separated by 222 nucleotides BWI76_RS25915 and BWI76_RS25920 are separated by 59 nucleotides BWI76_RS25920 and BWI76_RS25925 are separated by 94 nucleotides BWI76_RS25925 and BWI76_RS25930 are separated by 11 nucleotides
BWI76_RS25910: BWI76_RS25910 - peptidyl-prolyl cis-trans isomerase, at 5,358,128 to 5,358,946
_RS25910
BWI76_RS25915: BWI76_RS25915 - protein SlyX, at 5,359,169 to 5,359,387
_RS25915
BWI76_RS25920: BWI76_RS25920 - peptidylprolyl isomerase, at 5,359,447 to 5,360,034
_RS25920
BWI76_RS25925: BWI76_RS25925 - hypothetical protein, at 5,360,129 to 5,360,329
_RS25925
BWI76_RS25930: BWI76_RS25930 - glutathione-regulated potassium-efflux system protein KefB, at 5,360,341 to 5,362,146
_RS25930
Position (kb) 5359
5360
5361 Strain fitness (log2 ratio) -2
-1
0
1 at 5358.507 kb on + strand, within BWI76_RS25910 at 5358.607 kb on - strand, within BWI76_RS25910 at 5358.886 kb on - strand at 5358.953 kb on + strand at 5358.982 kb on - strand at 5359.006 kb on + strand at 5359.014 kb on - strand at 5359.052 kb on - strand at 5359.100 kb on + strand at 5359.146 kb on + strand at 5359.154 kb on - strand at 5359.154 kb on - strand at 5359.154 kb on - strand at 5359.194 kb on + strand, within BWI76_RS25915 at 5359.210 kb on - strand, within BWI76_RS25915 at 5359.329 kb on + strand, within BWI76_RS25915 at 5359.521 kb on - strand, within BWI76_RS25920 at 5359.585 kb on + strand, within BWI76_RS25920 at 5359.835 kb on - strand, within BWI76_RS25920 at 5359.993 kb on - strand at 5360.185 kb on + strand, within BWI76_RS25925 at 5360.254 kb on - strand, within BWI76_RS25925 at 5360.278 kb on - strand, within BWI76_RS25925 at 5360.425 kb on - strand at 5360.450 kb on - strand at 5360.628 kb on + strand, within BWI76_RS25930 at 5360.703 kb on - strand, within BWI76_RS25930
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,358,507 + BWI76_RS25910 0.46 -0.6 5,358,607 - BWI76_RS25910 0.58 +0.2 5,358,886 - -1.5 5,358,953 + -0.2 5,358,982 - -2.3 5,359,006 + +0.2 5,359,014 - +0.3 5,359,052 - +0.1 5,359,100 + +0.2 5,359,146 + +0.8 5,359,154 - +0.5 5,359,154 - -0.6 5,359,154 - -1.1 5,359,194 + BWI76_RS25915 0.11 -0.1 5,359,210 - BWI76_RS25915 0.19 +1.2 5,359,329 + BWI76_RS25915 0.73 +0.4 5,359,521 - BWI76_RS25920 0.13 -0.8 5,359,585 + BWI76_RS25920 0.23 -1.6 5,359,835 - BWI76_RS25920 0.66 -1.6 5,359,993 - -0.3 5,360,185 + BWI76_RS25925 0.28 -0.4 5,360,254 - BWI76_RS25925 0.62 -0.1 5,360,278 - BWI76_RS25925 0.74 +0.4 5,360,425 - +1.3 5,360,450 - +1.0 5,360,628 + BWI76_RS25930 0.16 +0.9 5,360,703 - BWI76_RS25930 0.20 -1.1
Or see this region's nucleotide sequence