Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24740

Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24735 and BWI76_RS24740 are separated by 127 nucleotidesBWI76_RS24740 and BWI76_RS24745 are separated by 338 nucleotides BWI76_RS24735: BWI76_RS24735 - MFS transporter, at 5,159,400 to 5,160,701 _RS24735 BWI76_RS24740: BWI76_RS24740 - GntR family transcriptional regulator, at 5,160,829 to 5,161,605 _RS24740 BWI76_RS24745: BWI76_RS24745 - membrane protein, at 5,161,944 to 5,162,606 _RS24745 Position (kb) 5160 5161 5162Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 5160.168 kb on + strand, within BWI76_RS24735at 5160.175 kb on + strand, within BWI76_RS24735at 5160.183 kb on - strand, within BWI76_RS24735at 5160.251 kb on - strand, within BWI76_RS24735at 5160.285 kb on - strand, within BWI76_RS24735at 5160.291 kb on - strand, within BWI76_RS24735at 5160.291 kb on - strand, within BWI76_RS24735at 5160.350 kb on - strand, within BWI76_RS24735at 5160.387 kb on + strand, within BWI76_RS24735at 5160.659 kb on + strandat 5160.944 kb on - strand, within BWI76_RS24740at 5161.454 kb on + strand, within BWI76_RS24740at 5161.472 kb on - strand, within BWI76_RS24740at 5161.621 kb on - strandat 5161.652 kb on - strandat 5161.678 kb on + strandat 5161.688 kb on + strandat 5161.836 kb on - strandat 5161.903 kb on - strandat 5161.926 kb on + strandat 5161.964 kb on + strandat 5162.032 kb on - strand, within BWI76_RS24745at 5162.100 kb on - strand, within BWI76_RS24745at 5162.194 kb on + strand, within BWI76_RS24745at 5162.238 kb on + strand, within BWI76_RS24745at 5162.451 kb on + strand, within BWI76_RS24745

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
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5,160,168 + BWI76_RS24735 0.59 +0.5
5,160,175 + BWI76_RS24735 0.60 -0.4
5,160,183 - BWI76_RS24735 0.60 -2.7
5,160,251 - BWI76_RS24735 0.65 -0.8
5,160,285 - BWI76_RS24735 0.68 -1.1
5,160,291 - BWI76_RS24735 0.68 -1.6
5,160,291 - BWI76_RS24735 0.68 +0.5
5,160,350 - BWI76_RS24735 0.73 +0.8
5,160,387 + BWI76_RS24735 0.76 -0.4
5,160,659 + +0.2
5,160,944 - BWI76_RS24740 0.15 -2.7
5,161,454 + BWI76_RS24740 0.80 -4.8
5,161,472 - BWI76_RS24740 0.83 -0.8
5,161,621 - +2.4
5,161,652 - -1.4
5,161,678 + -2.1
5,161,688 + +0.1
5,161,836 - -1.4
5,161,903 - -0.1
5,161,926 + -4.4
5,161,964 + -0.1
5,162,032 - BWI76_RS24745 0.13 +0.8
5,162,100 - BWI76_RS24745 0.24 -0.6
5,162,194 + BWI76_RS24745 0.38 -1.1
5,162,238 + BWI76_RS24745 0.44 +0.9
5,162,451 + BWI76_RS24745 0.76 -2.2

Or see this region's nucleotide sequence