Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24275 and BWI76_RS24280 are separated by 6 nucleotides BWI76_RS24280 and BWI76_RS24285 are separated by 251 nucleotides BWI76_RS24285 and BWI76_RS24290 are separated by 132 nucleotides BWI76_RS24290 and BWI76_RS24295 are separated by 31 nucleotides
BWI76_RS24275: BWI76_RS24275 - biopolymer transport protein ExbD, at 5,057,907 to 5,058,332
_RS24275
BWI76_RS24280: BWI76_RS24280 - biopolymer transporter ExbB, at 5,058,339 to 5,059,070
_RS24280
BWI76_RS24285: BWI76_RS24285 - cystathionine beta-lyase, at 5,059,322 to 5,060,509
_RS24285
BWI76_RS24290: BWI76_RS24290 - membrane protein, at 5,060,642 to 5,061,301
_RS24290
BWI76_RS24295: BWI76_RS24295 - AraC family transcriptional regulator, at 5,061,333 to 5,062,232
_RS24295
Position (kb) 5059
5060
5061 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 5058.382 kb on - strand at 5058.598 kb on - strand, within BWI76_RS24280 at 5058.746 kb on + strand, within BWI76_RS24280 at 5058.805 kb on - strand, within BWI76_RS24280 at 5058.990 kb on + strand, within BWI76_RS24280 at 5059.184 kb on + strand at 5059.256 kb on - strand at 5059.334 kb on + strand at 5059.336 kb on + strand at 5059.387 kb on - strand at 5059.546 kb on - strand, within BWI76_RS24285 at 5059.639 kb on + strand, within BWI76_RS24285 at 5059.658 kb on - strand, within BWI76_RS24285 at 5059.746 kb on + strand, within BWI76_RS24285 at 5059.750 kb on + strand, within BWI76_RS24285 at 5059.900 kb on + strand, within BWI76_RS24285 at 5060.087 kb on - strand, within BWI76_RS24285 at 5060.098 kb on + strand, within BWI76_RS24285 at 5060.102 kb on - strand, within BWI76_RS24285 at 5060.119 kb on - strand, within BWI76_RS24285 at 5060.286 kb on - strand, within BWI76_RS24285 at 5060.592 kb on + strand at 5060.721 kb on + strand, within BWI76_RS24290 at 5060.906 kb on - strand, within BWI76_RS24290 at 5060.949 kb on - strand, within BWI76_RS24290 at 5061.063 kb on + strand, within BWI76_RS24290 at 5061.202 kb on + strand, within BWI76_RS24290 at 5061.347 kb on - strand at 5061.432 kb on - strand, within BWI76_RS24295
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,058,382 - +0.2 5,058,598 - BWI76_RS24280 0.35 -0.8 5,058,746 + BWI76_RS24280 0.56 +2.1 5,058,805 - BWI76_RS24280 0.64 -0.9 5,058,990 + BWI76_RS24280 0.89 -3.1 5,059,184 + -0.1 5,059,256 - +0.3 5,059,334 + -3.3 5,059,336 + +1.1 5,059,387 - -6.0 5,059,546 - BWI76_RS24285 0.19 -1.4 5,059,639 + BWI76_RS24285 0.27 -0.7 5,059,658 - BWI76_RS24285 0.28 -4.0 5,059,746 + BWI76_RS24285 0.36 -1.1 5,059,750 + BWI76_RS24285 0.36 +0.1 5,059,900 + BWI76_RS24285 0.49 -2.9 5,060,087 - BWI76_RS24285 0.64 -3.6 5,060,098 + BWI76_RS24285 0.65 -5.2 5,060,102 - BWI76_RS24285 0.66 -2.8 5,060,119 - BWI76_RS24285 0.67 -2.5 5,060,286 - BWI76_RS24285 0.81 -4.5 5,060,592 + -0.9 5,060,721 + BWI76_RS24290 0.12 +1.3 5,060,906 - BWI76_RS24290 0.40 -1.2 5,060,949 - BWI76_RS24290 0.47 -0.1 5,061,063 + BWI76_RS24290 0.64 -0.3 5,061,202 + BWI76_RS24290 0.85 -0.3 5,061,347 - +0.8 5,061,432 - BWI76_RS24295 0.11 +0.5
Or see this region's nucleotide sequence