Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19585 and BWI76_RS19590 are separated by 11 nucleotides BWI76_RS19590 and BWI76_RS19595 are separated by 126 nucleotides
BWI76_RS19585: BWI76_RS19585 - gentisate 1,2-dioxygenase, at 4,094,371 to 4,095,408
_RS19585
BWI76_RS19590: BWI76_RS19590 - MFS transporter, at 4,095,420 to 4,096,778
_RS19590
BWI76_RS19595: BWI76_RS19595 - hypothetical protein, at 4,096,905 to 4,097,822
_RS19595
Position (kb) 4095
4096
4097 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 4094.553 kb on - strand, within BWI76_RS19585 at 4094.733 kb on - strand, within BWI76_RS19585 at 4094.905 kb on - strand, within BWI76_RS19585 at 4095.479 kb on + strand at 4095.500 kb on + strand at 4095.641 kb on - strand, within BWI76_RS19590 at 4095.812 kb on - strand, within BWI76_RS19590 at 4096.395 kb on - strand, within BWI76_RS19590 at 4096.409 kb on + strand, within BWI76_RS19590 at 4096.417 kb on - strand, within BWI76_RS19590 at 4096.804 kb on - strand at 4097.321 kb on + strand, within BWI76_RS19595 at 4097.414 kb on - strand, within BWI76_RS19595 at 4097.477 kb on - strand, within BWI76_RS19595 at 4097.555 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.672 kb on + strand, within BWI76_RS19595 at 4097.680 kb on - strand, within BWI76_RS19595 at 4097.690 kb on - strand, within BWI76_RS19595 at 4097.726 kb on + strand, within BWI76_RS19595 at 4097.770 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,094,553 - BWI76_RS19585 0.18 +0.0 4,094,733 - BWI76_RS19585 0.35 +0.2 4,094,905 - BWI76_RS19585 0.51 +0.2 4,095,479 + +0.6 4,095,500 + +0.5 4,095,641 - BWI76_RS19590 0.16 +3.8 4,095,812 - BWI76_RS19590 0.29 +1.7 4,096,395 - BWI76_RS19590 0.72 +0.9 4,096,409 + BWI76_RS19590 0.73 +0.6 4,096,417 - BWI76_RS19590 0.73 -0.1 4,096,804 - +0.6 4,097,321 + BWI76_RS19595 0.45 -0.0 4,097,414 - BWI76_RS19595 0.55 +0.3 4,097,477 - BWI76_RS19595 0.62 +0.9 4,097,555 + BWI76_RS19595 0.71 +0.0 4,097,672 + BWI76_RS19595 0.84 +0.2 4,097,672 + BWI76_RS19595 0.84 -0.3 4,097,672 + BWI76_RS19595 0.84 +0.6 4,097,672 + BWI76_RS19595 0.84 -0.7 4,097,680 - BWI76_RS19595 0.84 +3.0 4,097,690 - BWI76_RS19595 0.86 -0.6 4,097,726 + BWI76_RS19595 0.89 -1.4 4,097,770 + +0.9
Or see this region's nucleotide sequence