Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12405

Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
2,590,201	-		BWI76_RS12400	0.37	-0.9
2,590,238	-		BWI76_RS12400	0.42	+0.9
2,590,340	-		BWI76_RS12400	0.58	-1.2
2,590,353	-		BWI76_RS12400	0.60	+0.5
2,590,362	-				+0.7
2,590,407	-		BWI76_RS12400	0.68	-2.2
2,590,524	+		BWI76_RS12400	0.86	+1.4
2,590,532	-		BWI76_RS12400	0.87	+0.7
2,590,532	-		BWI76_RS12400	0.87	+0.1
2,590,532	-		BWI76_RS12400	0.87	+1.1
2,590,532	-		BWI76_RS12400	0.87	-0.5
2,590,532	-		BWI76_RS12400	0.87	+0.1
2,590,613	+				-3.2
2,590,621	-				+1.1
2,590,621	-				-0.4
2,590,679	-				-1.2
2,590,743	+				-0.5
2,590,751	-				-0.9
2,590,751	-				+0.9
2,590,751	-				-2.2
2,590,751	-				-2.2
2,590,757	+				-1.5
2,590,765	-				-2.9
2,590,775	-				-2.9
2,590,775	-				-2.6
2,590,775	-				-1.3
2,590,775	-				+0.7
2,590,779	-				-1.9
2,590,781	-				+0.9
2,590,791	-				-2.2
2,590,801	+				+0.1
2,590,814	+				-1.7
2,590,822	-				-1.4
2,590,822	-				-1.5
2,590,822	-				-0.8
2,590,822	-				-1.5
2,590,822	-				+1.4
2,590,824	+				-0.9
2,590,835	+				-1.2
2,590,859	+				-0.3
2,590,931	+				-1.7
2,590,939	+				+0.1
2,590,939	+				+1.9
2,590,940	-				-1.2
2,590,940	-				+1.1
2,590,948	+				-2.8
2,590,956	-				+0.1
2,590,961	-				-1.7
2,590,977	+				+1.1
2,591,012	+				+0.1
2,591,015	+				+0.4
2,591,023	+				-1.5
2,591,023	+				-0.6
2,591,023	+				+0.5
2,591,023	+				-0.9
2,591,023	+				-0.4
2,591,023	+				-2.8
2,591,023	+				-2.2
2,591,023	+				-0.7
2,591,023	+				+0.6
2,591,023	+				-3.3
2,591,023	+				-0.4
2,591,023	+				-3.2
2,591,023	+				-1.2
2,591,031	-				+1.1
2,591,031	-				-0.9
2,591,031	-				+1.7
2,591,031	-				+0.4
2,591,031	-				-0.5
2,591,031	-				-0.5
2,591,031	-				-1.7
2,591,037	+				-2.5
2,591,037	+				+0.2
2,591,037	+				-1.1
2,591,044	-				-2.2
2,591,079	+				-0.4
2,591,159	-				-3.3
2,591,179	-				-1.7
2,591,216	-				-3.6
2,591,229	-				-2.3
2,591,235	-				-2.5
2,591,277	+		BWI76_RS12405	0.13	-1.4
2,591,285	-		BWI76_RS12405	0.13	-0.9
2,591,312	-				-0.5
2,591,400	+		BWI76_RS12405	0.23	-1.5
2,591,400	+		BWI76_RS12405	0.23	-1.5
2,591,400	+		BWI76_RS12405	0.23	-0.9
2,591,400	+		BWI76_RS12405	0.23	-0.5
2,591,623	+				+0.1
2,591,728	+		BWI76_RS12405	0.51	-0.5
2,591,906	-		BWI76_RS12405	0.66	-0.3
2,591,906	-		BWI76_RS12405	0.66	+0.4
2,591,954	+		BWI76_RS12405	0.71	-2.0
2,591,957	-		BWI76_RS12405	0.71	+0.2
2,591,962	-				-0.5
2,591,962	-		BWI76_RS12405	0.71	-2.7
2,591,975	-		BWI76_RS12405	0.72	-0.9
2,591,988	+				-0.2
2,591,990	+		BWI76_RS12405	0.74	-2.3
2,592,042	-		BWI76_RS12405	0.78	-2.8
2,592,045	+		BWI76_RS12405	0.78	-2.8
2,592,053	-		BWI76_RS12405	0.79	-2.5
2,592,132	+		BWI76_RS12405	0.86	+1.1
2,592,134	+		BWI76_RS12405	0.86	-1.5
2,592,135	-		BWI76_RS12405	0.86	-0.9
2,592,266	+				-1.2
2,592,269	-				+0.2
2,592,269	-				-0.3
2,592,497	+				-1.1
2,592,530	+				+0.2
2,592,535	+				+0.2
2,592,566	+		BWI76_RS12410	0.12	+0.2
2,592,589	-		BWI76_RS12410	0.20	-2.2
2,592,627	+		BWI76_RS12410	0.32	+0.2
2,592,627	+		BWI76_RS12410	0.32	-0.6
2,592,641	+		BWI76_RS12410	0.37	-1.7
2,592,641	+		BWI76_RS12410	0.37	-0.7
2,592,641	+		BWI76_RS12410	0.37	-3.8
2,592,648	-		BWI76_RS12410	0.39	-0.0
2,592,649	-		BWI76_RS12410	0.39	-0.9
2,592,656	-		BWI76_RS12410	0.41	+1.1
2,592,672	+		BWI76_RS12410	0.46	-1.5
2,592,672	+		BWI76_RS12410	0.46	+0.0
2,592,726	-		BWI76_RS12410	0.64	-3.2
2,592,794	-		BWI76_RS12410	0.86	-1.2
2,592,794	-		BWI76_RS12410	0.86	-0.1
2,592,828	+				-1.7
2,592,851	-				-1.9
2,592,873	-				+2.4
2,592,874	-				+0.5