Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08010 and BWI76_RS08015 are separated by 91 nucleotides BWI76_RS08015 and BWI76_RS08020 are separated by 106 nucleotides BWI76_RS08020 and BWI76_RS08025 are separated by 142 nucleotides
BWI76_RS08010: BWI76_RS08010 - octanoyltransferase, at 1,698,466 to 1,699,110
_RS08010
BWI76_RS08015: BWI76_RS08015 - hypothetical protein, at 1,699,202 to 1,699,465
_RS08015
BWI76_RS08020: BWI76_RS08020 - serine-type D-Ala-D-Ala carboxypeptidase, at 1,699,572 to 1,700,771
_RS08020
BWI76_RS08025: BWI76_RS08025 - septal ring lytic transglycosylase RlpA, at 1,700,914 to 1,702,014
_RS08025
Position (kb)
1699
1700
1701 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1699.151 kb on + strand at 1699.755 kb on - strand, within BWI76_RS08020 at 1700.122 kb on - strand, within BWI76_RS08020 at 1700.205 kb on + strand, within BWI76_RS08020 at 1700.215 kb on + strand, within BWI76_RS08020 at 1700.223 kb on - strand, within BWI76_RS08020 at 1700.259 kb on - strand, within BWI76_RS08020 at 1700.467 kb on + strand, within BWI76_RS08020 at 1700.504 kb on + strand, within BWI76_RS08020 at 1700.504 kb on + strand, within BWI76_RS08020 at 1700.707 kb on + strand at 1700.941 kb on + strand at 1700.949 kb on - strand at 1701.202 kb on + strand, within BWI76_RS08025 at 1701.311 kb on - strand, within BWI76_RS08025 at 1701.437 kb on + strand, within BWI76_RS08025 at 1701.525 kb on + strand, within BWI76_RS08025 at 1701.700 kb on - strand, within BWI76_RS08025
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,699,151 + +0.9 1,699,755 - BWI76_RS08020 0.15 -4.0 1,700,122 - BWI76_RS08020 0.46 -0.6 1,700,205 + BWI76_RS08020 0.53 -1.4 1,700,215 + BWI76_RS08020 0.54 +2.0 1,700,223 - BWI76_RS08020 0.54 -4.7 1,700,259 - BWI76_RS08020 0.57 -2.5 1,700,467 + BWI76_RS08020 0.75 -1.0 1,700,504 + BWI76_RS08020 0.78 -1.3 1,700,504 + BWI76_RS08020 0.78 -2.7 1,700,707 + -4.6 1,700,941 + -0.7 1,700,949 - -1.2 1,701,202 + BWI76_RS08025 0.26 +0.7 1,701,311 - BWI76_RS08025 0.36 -1.1 1,701,437 + BWI76_RS08025 0.48 -0.8 1,701,525 + BWI76_RS08025 0.55 +0.2 1,701,700 - BWI76_RS08025 0.71 +0.6
Or see this region's nucleotide sequence