Experiment: RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06675 and BWI76_RS06680 are separated by 166 nucleotides BWI76_RS06680 and BWI76_RS06685 are separated by 2 nucleotides
BWI76_RS06675: BWI76_RS06675 - nickel/cobalt efflux protein RcnA, at 1,399,250 to 1,400,083
_RS06675
BWI76_RS06680: BWI76_RS06680 - hypothetical protein, at 1,400,250 to 1,400,522
_RS06680
BWI76_RS06685: BWI76_RS06685 - cyclic diguanylate phosphodiesterase (EAL) domain-containing protein, at 1,400,525 to 1,402,111
_RS06685
Position (kb)
1400
1401 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1399.301 kb on - strand at 1399.444 kb on + strand, within BWI76_RS06675 at 1399.452 kb on - strand, within BWI76_RS06675 at 1399.489 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.554 kb on + strand, within BWI76_RS06675 at 1399.562 kb on - strand, within BWI76_RS06675 at 1399.640 kb on + strand, within BWI76_RS06675 at 1399.808 kb on - strand, within BWI76_RS06675 at 1399.818 kb on - strand, within BWI76_RS06675 at 1399.886 kb on - strand, within BWI76_RS06675 at 1399.934 kb on + strand, within BWI76_RS06675 at 1399.993 kb on + strand, within BWI76_RS06675 at 1399.993 kb on + strand, within BWI76_RS06675 at 1399.993 kb on + strand, within BWI76_RS06675 at 1400.001 kb on - strand at 1400.010 kb on + strand at 1400.020 kb on + strand at 1400.252 kb on + strand at 1400.473 kb on + strand, within BWI76_RS06680 at 1400.523 kb on + strand at 1400.627 kb on - strand at 1400.632 kb on - strand at 1400.676 kb on + strand at 1400.746 kb on + strand, within BWI76_RS06685 at 1400.754 kb on - strand, within BWI76_RS06685 at 1400.829 kb on - strand, within BWI76_RS06685 at 1400.843 kb on - strand, within BWI76_RS06685 at 1400.911 kb on + strand, within BWI76_RS06685 at 1401.047 kb on - strand, within BWI76_RS06685 at 1401.076 kb on - strand, within BWI76_RS06685 at 1401.202 kb on + strand, within BWI76_RS06685 at 1401.459 kb on + strand, within BWI76_RS06685 at 1401.482 kb on + strand, within BWI76_RS06685 at 1401.482 kb on + strand, within BWI76_RS06685 at 1401.496 kb on - strand, within BWI76_RS06685
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Methylobacterium sp. UNC378MF 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,399,301 - +1.1 1,399,444 + BWI76_RS06675 0.23 +0.1 1,399,452 - BWI76_RS06675 0.24 +0.2 1,399,489 + BWI76_RS06675 0.29 -0.9 1,399,554 + BWI76_RS06675 0.36 +0.1 1,399,554 + BWI76_RS06675 0.36 +0.1 1,399,554 + BWI76_RS06675 0.36 +0.2 1,399,562 - BWI76_RS06675 0.37 +1.0 1,399,640 + BWI76_RS06675 0.47 -0.8 1,399,808 - BWI76_RS06675 0.67 +0.0 1,399,818 - BWI76_RS06675 0.68 -0.3 1,399,886 - BWI76_RS06675 0.76 +0.5 1,399,934 + BWI76_RS06675 0.82 -0.5 1,399,993 + BWI76_RS06675 0.89 -1.5 1,399,993 + BWI76_RS06675 0.89 -0.3 1,399,993 + BWI76_RS06675 0.89 -0.9 1,400,001 - -0.1 1,400,010 + -0.1 1,400,020 + -0.2 1,400,252 + -0.8 1,400,473 + BWI76_RS06680 0.82 -3.6 1,400,523 + -0.4 1,400,627 - +1.0 1,400,632 - +1.5 1,400,676 + +0.2 1,400,746 + BWI76_RS06685 0.14 +0.7 1,400,754 - BWI76_RS06685 0.14 +0.5 1,400,829 - BWI76_RS06685 0.19 +1.1 1,400,843 - BWI76_RS06685 0.20 -0.2 1,400,911 + BWI76_RS06685 0.24 -0.2 1,401,047 - BWI76_RS06685 0.33 +0.9 1,401,076 - BWI76_RS06685 0.35 -0.9 1,401,202 + BWI76_RS06685 0.43 -1.6 1,401,459 + BWI76_RS06685 0.59 +1.0 1,401,482 + BWI76_RS06685 0.60 -0.2 1,401,482 + BWI76_RS06685 0.60 +0.4 1,401,496 - BWI76_RS06685 0.61 +1.0
Or see this region's nucleotide sequence