Strain Fitness in Sinorhizobium meliloti 1021 around SMc03987

Experiment: Maltitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03985 and SMc03986 are separated by 145 nucleotidesSMc03986 and SMc03987 are separated by 181 nucleotidesSMc03987 and SMc03988 overlap by 14 nucleotidesSMc03988 and SMc03989 are separated by 363 nucleotides SMc03985: SMc03985 - adenylate/guanylate cyclase, at 2,982,469 to 2,984,373 SMc03985 SMc03986: SMc03986 - hypothetical protein, at 2,984,519 to 2,984,674 SMc03986 SMc03987: SMc03987 - transport transmembrane protein, at 2,984,856 to 2,986,157 SMc03987 SMc03988: SMc03988 - hypothetical protein, at 2,986,144 to 2,986,332 SMc03988 SMc03989: SMc03989 - hypothetical protein, at 2,986,696 to 2,987,286 SMc03989 Position (kb) 2984 2985 2986 2987Strain fitness (log2 ratio) -2 -1 0 1 2at 2983.890 kb on + strand, within SMc03985at 2984.107 kb on - strand, within SMc03985at 2984.202 kb on + strandat 2984.202 kb on + strandat 2984.202 kb on + strandat 2984.202 kb on + strandat 2984.202 kb on + strandat 2984.203 kb on - strandat 2984.203 kb on - strandat 2984.203 kb on - strandat 2984.203 kb on - strandat 2984.376 kb on + strandat 2984.414 kb on - strandat 2984.446 kb on + strandat 2984.515 kb on + strandat 2984.515 kb on + strandat 2984.515 kb on + strandat 2984.749 kb on + strandat 2984.749 kb on + strandat 2984.967 kb on + strandat 2985.258 kb on + strand, within SMc03987at 2985.259 kb on - strand, within SMc03987at 2985.259 kb on - strand, within SMc03987at 2985.260 kb on + strand, within SMc03987at 2985.358 kb on - strand, within SMc03987at 2985.358 kb on - strand, within SMc03987at 2985.747 kb on + strand, within SMc03987at 2985.852 kb on + strand, within SMc03987at 2985.895 kb on + strand, within SMc03987at 2985.947 kb on + strand, within SMc03987at 2985.947 kb on + strand, within SMc03987at 2985.947 kb on + strand, within SMc03987at 2985.948 kb on - strand, within SMc03987at 2985.948 kb on - strand, within SMc03987at 2985.964 kb on - strand, within SMc03987at 2985.964 kb on - strand, within SMc03987at 2986.154 kb on - strandat 2986.360 kb on + strandat 2986.361 kb on - strandat 2986.655 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Maltitol (C)
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2,983,890 + SMc03985 0.75 +0.7
2,984,107 - SMc03985 0.86 -0.0
2,984,202 + -1.0
2,984,202 + +0.7
2,984,202 + +0.6
2,984,202 + +0.9
2,984,202 + +0.7
2,984,203 - -0.0
2,984,203 - -0.3
2,984,203 - +0.6
2,984,203 - +0.7
2,984,376 + +0.6
2,984,414 - -0.8
2,984,446 + +0.8
2,984,515 + +1.0
2,984,515 + +0.6
2,984,515 + +1.3
2,984,749 + +0.6
2,984,749 + +1.8
2,984,967 + -1.7
2,985,258 + SMc03987 0.31 -2.7
2,985,259 - SMc03987 0.31 -1.1
2,985,259 - SMc03987 0.31 -1.2
2,985,260 + SMc03987 0.31 +0.1
2,985,358 - SMc03987 0.39 -2.0
2,985,358 - SMc03987 0.39 +0.9
2,985,747 + SMc03987 0.68 -2.1
2,985,852 + SMc03987 0.76 -0.2
2,985,895 + SMc03987 0.80 -1.0
2,985,947 + SMc03987 0.84 -2.0
2,985,947 + SMc03987 0.84 -1.8
2,985,947 + SMc03987 0.84 -0.5
2,985,948 - SMc03987 0.84 -2.1
2,985,948 - SMc03987 0.84 -2.1
2,985,964 - SMc03987 0.85 -1.6
2,985,964 - SMc03987 0.85 -2.3
2,986,154 - -0.7
2,986,360 + -0.1
2,986,361 - -0.3
2,986,655 + -1.6

Or see this region's nucleotide sequence