Experiment: KB with Harmalol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5053 and Psyr_5054 are separated by 55 nucleotides Psyr_5054 and Psyr_5055 are separated by 119 nucleotides
Psyr_5053: Psyr_5053 - asparaginase, at 5,995,267 to 5,996,271
_5053
Psyr_5054: Psyr_5054 - Protein of unknown function UPF0187, at 5,996,327 to 5,997,214
_5054
Psyr_5055: Psyr_5055 - YeeE/YedE, at 5,997,334 to 5,998,545
_5055
Position (kb) 5996
5997
5998 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5995.576 kb on + strand, within Psyr_5053 at 5995.738 kb on + strand, within Psyr_5053 at 5995.738 kb on + strand, within Psyr_5053 at 5995.739 kb on - strand, within Psyr_5053 at 5995.739 kb on - strand, within Psyr_5053 at 5995.739 kb on - strand, within Psyr_5053 at 5995.739 kb on - strand, within Psyr_5053 at 5995.867 kb on + strand, within Psyr_5053 at 5995.868 kb on - strand, within Psyr_5053 at 5995.887 kb on + strand, within Psyr_5053 at 5995.887 kb on + strand, within Psyr_5053 at 5995.887 kb on + strand, within Psyr_5053 at 5995.887 kb on + strand, within Psyr_5053 at 5995.887 kb on + strand, within Psyr_5053 at 5995.887 kb on + strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5995.888 kb on - strand, within Psyr_5053 at 5996.056 kb on - strand, within Psyr_5053 at 5996.110 kb on + strand, within Psyr_5053 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.589 kb on + strand, within Psyr_5054 at 5996.590 kb on - strand, within Psyr_5054 at 5996.590 kb on - strand, within Psyr_5054 at 5996.596 kb on - strand, within Psyr_5054 at 5996.608 kb on + strand, within Psyr_5054 at 5996.608 kb on + strand, within Psyr_5054 at 5996.609 kb on - strand, within Psyr_5054 at 5996.617 kb on + strand, within Psyr_5054 at 5996.618 kb on - strand, within Psyr_5054 at 5996.734 kb on + strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.735 kb on - strand, within Psyr_5054 at 5996.859 kb on + strand, within Psyr_5054 at 5996.859 kb on + strand, within Psyr_5054 at 5996.859 kb on + strand, within Psyr_5054 at 5996.860 kb on - strand, within Psyr_5054 at 5996.860 kb on - strand, within Psyr_5054 at 5997.003 kb on + strand, within Psyr_5054 at 5997.003 kb on + strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.004 kb on - strand, within Psyr_5054 at 5997.096 kb on + strand, within Psyr_5054 at 5997.096 kb on + strand, within Psyr_5054 at 5997.097 kb on - strand, within Psyr_5054 at 5997.097 kb on - strand, within Psyr_5054 at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.158 kb on + strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.159 kb on - strand at 5997.163 kb on - strand at 5997.163 kb on - strand at 5997.236 kb on + strand at 5997.249 kb on + strand at 5997.249 kb on + strand at 5997.260 kb on - strand at 5997.312 kb on + strand at 5997.417 kb on - strand at 5997.473 kb on + strand, within Psyr_5055 at 5997.473 kb on + strand, within Psyr_5055 at 5997.474 kb on - strand, within Psyr_5055 at 5997.809 kb on + strand, within Psyr_5055 at 5997.809 kb on + strand, within Psyr_5055
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM remove 5,995,576 + Psyr_5053 0.31 -2.5 5,995,738 + Psyr_5053 0.47 -1.7 5,995,738 + Psyr_5053 0.47 -1.1 5,995,739 - Psyr_5053 0.47 +0.1 5,995,739 - Psyr_5053 0.47 -1.1 5,995,739 - Psyr_5053 0.47 -1.6 5,995,739 - Psyr_5053 0.47 -0.7 5,995,867 + Psyr_5053 0.60 -0.6 5,995,868 - Psyr_5053 0.60 -0.2 5,995,887 + Psyr_5053 0.62 -1.3 5,995,887 + Psyr_5053 0.62 -0.6 5,995,887 + Psyr_5053 0.62 -2.7 5,995,887 + Psyr_5053 0.62 -2.7 5,995,887 + Psyr_5053 0.62 -1.0 5,995,887 + Psyr_5053 0.62 -0.9 5,995,888 - Psyr_5053 0.62 -0.4 5,995,888 - Psyr_5053 0.62 +0.9 5,995,888 - Psyr_5053 0.62 -1.3 5,995,888 - Psyr_5053 0.62 -1.9 5,995,888 - Psyr_5053 0.62 -1.3 5,995,888 - Psyr_5053 0.62 +0.1 5,995,888 - Psyr_5053 0.62 -0.4 5,995,888 - Psyr_5053 0.62 -2.5 5,996,056 - Psyr_5053 0.79 -0.4 5,996,110 + Psyr_5053 0.84 -1.4 5,996,589 + Psyr_5054 0.30 -0.5 5,996,589 + Psyr_5054 0.30 +0.4 5,996,589 + Psyr_5054 0.30 +0.2 5,996,589 + Psyr_5054 0.30 +1.1 5,996,589 + Psyr_5054 0.30 -0.4 5,996,590 - Psyr_5054 0.30 -0.8 5,996,590 - Psyr_5054 0.30 -0.5 5,996,596 - Psyr_5054 0.30 -0.8 5,996,608 + Psyr_5054 0.32 +0.1 5,996,608 + Psyr_5054 0.32 -0.3 5,996,609 - Psyr_5054 0.32 +0.2 5,996,617 + Psyr_5054 0.33 +0.2 5,996,618 - Psyr_5054 0.33 +1.3 5,996,734 + Psyr_5054 0.46 -0.4 5,996,735 - Psyr_5054 0.46 -0.7 5,996,735 - Psyr_5054 0.46 +0.9 5,996,735 - Psyr_5054 0.46 +1.5 5,996,735 - Psyr_5054 0.46 +0.5 5,996,735 - Psyr_5054 0.46 +0.5 5,996,859 + Psyr_5054 0.60 +0.4 5,996,859 + Psyr_5054 0.60 +0.9 5,996,859 + Psyr_5054 0.60 -0.3 5,996,860 - Psyr_5054 0.60 +0.8 5,996,860 - Psyr_5054 0.60 +1.9 5,997,003 + Psyr_5054 0.76 -1.1 5,997,003 + Psyr_5054 0.76 -0.2 5,997,004 - Psyr_5054 0.76 -0.7 5,997,004 - Psyr_5054 0.76 -0.5 5,997,004 - Psyr_5054 0.76 +1.3 5,997,004 - Psyr_5054 0.76 -1.6 5,997,096 + Psyr_5054 0.87 -0.1 5,997,096 + Psyr_5054 0.87 -0.1 5,997,097 - Psyr_5054 0.87 -0.7 5,997,097 - Psyr_5054 0.87 -0.1 5,997,158 + -1.2 5,997,158 + +0.1 5,997,158 + -0.3 5,997,158 + -1.0 5,997,158 + -2.7 5,997,158 + +1.9 5,997,158 + +0.7 5,997,158 + +0.9 5,997,158 + -1.0 5,997,158 + -0.2 5,997,158 + +0.0 5,997,158 + +1.5 5,997,159 - +2.1 5,997,159 - +0.5 5,997,159 - +1.3 5,997,159 - -1.7 5,997,159 - +0.8 5,997,159 - -0.9 5,997,159 - +0.1 5,997,159 - +0.1 5,997,159 - -1.0 5,997,159 - -0.3 5,997,159 - -0.5 5,997,159 - -0.2 5,997,159 - -0.4 5,997,159 - -0.1 5,997,159 - -0.1 5,997,159 - +0.5 5,997,159 - +0.5 5,997,163 - +1.2 5,997,163 - -1.2 5,997,236 + +1.0 5,997,249 + +0.1 5,997,249 + -0.2 5,997,260 - -0.1 5,997,312 + +0.1 5,997,417 - +0.0 5,997,473 + Psyr_5055 0.11 -0.1 5,997,473 + Psyr_5055 0.11 -1.5 5,997,474 - Psyr_5055 0.12 -0.6 5,997,809 + Psyr_5055 0.39 -0.4 5,997,809 + Psyr_5055 0.39 -0.8
Or see this region's nucleotide sequence