Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4327

Experiment: KB with Harmalol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4326 and Psyr_4327 are separated by 122 nucleotidesPsyr_4327 and Psyr_4328 are separated by 161 nucleotides Psyr_4326: Psyr_4326 - type III effector HopI1, at 5,178,780 to 5,179,790 _4326 Psyr_4327: Psyr_4327 - Endoribonuclease L-PSP, at 5,179,913 to 5,180,296 _4327 Psyr_4328: Psyr_4328 - Protein of unknown function DUF633, at 5,180,458 to 5,181,159 _4328 Position (kb) 5179 5180 5181Strain fitness (log2 ratio) -2 -1 0 1 2at 5178.931 kb on + strand, within Psyr_4326at 5178.931 kb on + strand, within Psyr_4326at 5178.931 kb on + strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.932 kb on - strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.952 kb on + strand, within Psyr_4326at 5178.953 kb on - strand, within Psyr_4326at 5179.009 kb on + strand, within Psyr_4326at 5179.009 kb on + strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.010 kb on - strand, within Psyr_4326at 5179.206 kb on - strand, within Psyr_4326at 5179.206 kb on - strand, within Psyr_4326at 5179.206 kb on - strand, within Psyr_4326at 5179.343 kb on - strand, within Psyr_4326at 5179.439 kb on + strand, within Psyr_4326at 5179.720 kb on - strandat 5179.720 kb on - strandat 5179.907 kb on + strandat 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.025 kb on + strand, within Psyr_4327at 5180.026 kb on - strand, within Psyr_4327at 5180.026 kb on - strand, within Psyr_4327at 5180.026 kb on - strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.067 kb on + strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.068 kb on - strand, within Psyr_4327at 5180.404 kb on + strandat 5180.878 kb on + strand, within Psyr_4328at 5180.962 kb on + strand, within Psyr_4328at 5180.962 kb on + strand, within Psyr_4328at 5180.963 kb on - strand, within Psyr_4328at 5180.963 kb on - strand, within Psyr_4328at 5180.963 kb on - strand, within Psyr_4328at 5180.963 kb on - strand, within Psyr_4328at 5180.963 kb on - strand, within Psyr_4328at 5180.963 kb on - strand, within Psyr_4328at 5180.980 kb on + strand, within Psyr_4328at 5180.980 kb on + strand, within Psyr_4328at 5180.981 kb on - strand, within Psyr_4328at 5180.981 kb on - strand, within Psyr_4328at 5181.217 kb on + strandat 5181.227 kb on + strandat 5181.227 kb on + strandat 5181.227 kb on + strandat 5181.227 kb on + strandat 5181.227 kb on + strandat 5181.227 kb on + strandat 5181.228 kb on - strandat 5181.228 kb on - strandat 5181.228 kb on - strandat 5181.228 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM
remove
5,178,931 + Psyr_4326 0.15 +0.7
5,178,931 + Psyr_4326 0.15 -0.9
5,178,931 + Psyr_4326 0.15 +0.3
5,178,932 - Psyr_4326 0.15 +0.9
5,178,932 - Psyr_4326 0.15 -1.4
5,178,932 - Psyr_4326 0.15 +0.1
5,178,932 - Psyr_4326 0.15 +0.3
5,178,952 + Psyr_4326 0.17 +0.1
5,178,952 + Psyr_4326 0.17 -0.8
5,178,952 + Psyr_4326 0.17 -0.5
5,178,952 + Psyr_4326 0.17 +0.4
5,178,953 - Psyr_4326 0.17 -0.1
5,179,009 + Psyr_4326 0.23 +0.2
5,179,009 + Psyr_4326 0.23 -0.4
5,179,010 - Psyr_4326 0.23 -0.6
5,179,010 - Psyr_4326 0.23 +0.0
5,179,010 - Psyr_4326 0.23 +1.1
5,179,010 - Psyr_4326 0.23 -0.3
5,179,010 - Psyr_4326 0.23 +0.7
5,179,010 - Psyr_4326 0.23 -0.2
5,179,206 - Psyr_4326 0.42 +0.6
5,179,206 - Psyr_4326 0.42 -2.2
5,179,206 - Psyr_4326 0.42 +0.4
5,179,343 - Psyr_4326 0.56 -0.9
5,179,439 + Psyr_4326 0.65 +1.7
5,179,720 - +0.8
5,179,720 - -0.3
5,179,907 + +0.2
5,180,025 + Psyr_4327 0.29 +0.9
5,180,025 + Psyr_4327 0.29 -0.2
5,180,025 + Psyr_4327 0.29 +1.2
5,180,025 + Psyr_4327 0.29 +0.5
5,180,025 + Psyr_4327 0.29 +0.2
5,180,025 + Psyr_4327 0.29 -0.4
5,180,026 - Psyr_4327 0.29 +0.3
5,180,026 - Psyr_4327 0.29 +0.2
5,180,026 - Psyr_4327 0.29 +0.0
5,180,067 + Psyr_4327 0.40 +1.3
5,180,067 + Psyr_4327 0.40 +1.4
5,180,067 + Psyr_4327 0.40 +0.1
5,180,067 + Psyr_4327 0.40 +1.0
5,180,068 - Psyr_4327 0.40 -1.1
5,180,068 - Psyr_4327 0.40 +0.9
5,180,068 - Psyr_4327 0.40 -0.3
5,180,068 - Psyr_4327 0.40 +1.1
5,180,068 - Psyr_4327 0.40 -0.1
5,180,404 + -0.3
5,180,878 + Psyr_4328 0.60 -0.4
5,180,962 + Psyr_4328 0.72 -2.1
5,180,962 + Psyr_4328 0.72 -0.3
5,180,963 - Psyr_4328 0.72 +1.4
5,180,963 - Psyr_4328 0.72 +0.6
5,180,963 - Psyr_4328 0.72 +0.2
5,180,963 - Psyr_4328 0.72 -0.3
5,180,963 - Psyr_4328 0.72 +0.8
5,180,963 - Psyr_4328 0.72 +0.7
5,180,980 + Psyr_4328 0.74 +0.4
5,180,980 + Psyr_4328 0.74 -0.3
5,180,981 - Psyr_4328 0.75 -0.7
5,180,981 - Psyr_4328 0.75 +2.0
5,181,217 + -1.5
5,181,227 + -0.9
5,181,227 + -0.3
5,181,227 + +0.9
5,181,227 + -0.5
5,181,227 + -1.7
5,181,227 + -0.3
5,181,228 - +0.2
5,181,228 - -0.5
5,181,228 - -0.7
5,181,228 - -0.7

Or see this region's nucleotide sequence