Experiment: KB with Harmalol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4298 and Psyr_4299 are separated by 167 nucleotides Psyr_4299 and Psyr_4300 are separated by 4 nucleotides Psyr_4300 and Psyr_4301 are separated by 18 nucleotides
Psyr_4298: Psyr_4298 - Protein of unknown function DUF6, at 5,125,227 to 5,126,141
_4298
Psyr_4299: Psyr_4299 - transcriptional regulator, AsnC family, at 5,126,309 to 5,126,776
_4299
Psyr_4300: Psyr_4300 - DNA polymerase III, epsilon subunit, at 5,126,781 to 5,127,395
_4300
Psyr_4301: Psyr_4301 - Protein of unknown function DUF88, at 5,127,414 to 5,127,890
_4301
Position (kb) 5126
5127 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5125.396 kb on + strand, within Psyr_4298 at 5125.396 kb on + strand, within Psyr_4298 at 5125.397 kb on - strand, within Psyr_4298 at 5125.402 kb on + strand, within Psyr_4298 at 5125.403 kb on - strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.441 kb on + strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.442 kb on - strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.445 kb on + strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.446 kb on - strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.447 kb on + strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.448 kb on - strand, within Psyr_4298 at 5125.467 kb on - strand, within Psyr_4298 at 5125.486 kb on + strand, within Psyr_4298 at 5125.486 kb on + strand, within Psyr_4298 at 5125.486 kb on + strand, within Psyr_4298 at 5125.487 kb on - strand, within Psyr_4298 at 5125.487 kb on - strand, within Psyr_4298 at 5125.520 kb on + strand, within Psyr_4298 at 5125.687 kb on + strand, within Psyr_4298 at 5125.687 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.981 kb on + strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5125.982 kb on - strand, within Psyr_4298 at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.065 kb on + strand at 5126.066 kb on - strand at 5126.066 kb on - strand at 5126.066 kb on - strand at 5126.069 kb on + strand at 5126.070 kb on - strand at 5126.087 kb on - strand at 5126.087 kb on - strand at 5126.146 kb on - strand at 5126.164 kb on + strand at 5126.175 kb on + strand at 5126.175 kb on + strand at 5126.176 kb on - strand at 5126.176 kb on - strand at 5126.180 kb on + strand at 5126.181 kb on - strand at 5126.202 kb on + strand at 5126.203 kb on - strand at 5126.203 kb on - strand at 5126.253 kb on + strand at 5126.321 kb on - strand at 5126.321 kb on - strand at 5126.321 kb on - strand at 5126.321 kb on - strand at 5126.324 kb on + strand at 5126.324 kb on + strand at 5126.324 kb on + strand at 5126.324 kb on + strand at 5126.324 kb on + strand at 5126.324 kb on + strand at 5126.324 kb on + strand at 5126.324 kb on + strand at 5126.325 kb on - strand at 5126.325 kb on - strand at 5126.325 kb on - strand at 5126.325 kb on - strand at 5126.325 kb on - strand at 5126.325 kb on - strand at 5126.325 kb on - strand at 5126.325 kb on - strand at 5126.436 kb on + strand, within Psyr_4299 at 5126.437 kb on - strand, within Psyr_4299 at 5126.437 kb on - strand, within Psyr_4299 at 5126.463 kb on - strand, within Psyr_4299 at 5126.553 kb on - strand, within Psyr_4299 at 5126.553 kb on - strand, within Psyr_4299 at 5126.553 kb on - strand, within Psyr_4299 at 5126.553 kb on - strand, within Psyr_4299 at 5126.617 kb on - strand, within Psyr_4299 at 5126.744 kb on + strand at 5126.744 kb on + strand at 5126.744 kb on + strand at 5126.744 kb on + strand at 5126.745 kb on - strand at 5127.094 kb on + strand, within Psyr_4300 at 5127.094 kb on + strand, within Psyr_4300 at 5127.095 kb on - strand, within Psyr_4300 at 5127.248 kb on + strand, within Psyr_4300 at 5127.248 kb on + strand, within Psyr_4300 at 5127.339 kb on - strand at 5127.383 kb on + strand at 5127.384 kb on - strand at 5127.384 kb on - strand at 5127.384 kb on - strand at 5127.384 kb on - strand at 5127.384 kb on - strand at 5127.384 kb on - strand at 5127.411 kb on - strand at 5127.411 kb on - strand at 5127.500 kb on - strand, within Psyr_4301 at 5127.669 kb on - strand, within Psyr_4301 at 5127.670 kb on + strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.671 kb on - strand, within Psyr_4301 at 5127.709 kb on - strand, within Psyr_4301
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM remove 5,125,396 + Psyr_4298 0.18 -1.6 5,125,396 + Psyr_4298 0.18 +0.4 5,125,397 - Psyr_4298 0.19 -0.5 5,125,402 + Psyr_4298 0.19 -0.6 5,125,403 - Psyr_4298 0.19 +1.7 5,125,441 + Psyr_4298 0.23 -0.3 5,125,441 + Psyr_4298 0.23 +0.5 5,125,441 + Psyr_4298 0.23 +0.4 5,125,441 + Psyr_4298 0.23 -0.1 5,125,441 + Psyr_4298 0.23 +0.3 5,125,441 + Psyr_4298 0.23 -1.4 5,125,441 + Psyr_4298 0.23 -0.3 5,125,441 + Psyr_4298 0.23 -0.8 5,125,441 + Psyr_4298 0.23 +0.4 5,125,441 + Psyr_4298 0.23 -0.1 5,125,441 + Psyr_4298 0.23 -0.2 5,125,442 - Psyr_4298 0.23 +0.6 5,125,442 - Psyr_4298 0.23 +0.7 5,125,442 - Psyr_4298 0.23 -0.2 5,125,442 - Psyr_4298 0.23 +0.1 5,125,442 - Psyr_4298 0.23 +0.4 5,125,442 - Psyr_4298 0.23 +0.0 5,125,445 + Psyr_4298 0.24 +0.6 5,125,445 + Psyr_4298 0.24 -1.4 5,125,445 + Psyr_4298 0.24 -1.1 5,125,445 + Psyr_4298 0.24 +0.4 5,125,445 + Psyr_4298 0.24 -1.7 5,125,445 + Psyr_4298 0.24 +0.6 5,125,445 + Psyr_4298 0.24 +0.9 5,125,445 + Psyr_4298 0.24 +0.3 5,125,445 + Psyr_4298 0.24 +0.3 5,125,445 + Psyr_4298 0.24 -0.1 5,125,445 + Psyr_4298 0.24 -1.0 5,125,445 + Psyr_4298 0.24 +0.5 5,125,445 + Psyr_4298 0.24 -0.6 5,125,445 + Psyr_4298 0.24 +0.6 5,125,445 + Psyr_4298 0.24 +2.1 5,125,445 + Psyr_4298 0.24 -0.2 5,125,445 + Psyr_4298 0.24 +1.1 5,125,445 + Psyr_4298 0.24 -0.6 5,125,445 + Psyr_4298 0.24 -0.0 5,125,445 + Psyr_4298 0.24 +0.0 5,125,445 + Psyr_4298 0.24 -0.9 5,125,445 + Psyr_4298 0.24 +0.5 5,125,445 + Psyr_4298 0.24 -0.5 5,125,446 - Psyr_4298 0.24 +0.0 5,125,446 - Psyr_4298 0.24 +1.5 5,125,446 - Psyr_4298 0.24 +0.8 5,125,446 - Psyr_4298 0.24 -2.4 5,125,446 - Psyr_4298 0.24 +0.5 5,125,446 - Psyr_4298 0.24 -0.5 5,125,446 - Psyr_4298 0.24 +0.2 5,125,446 - Psyr_4298 0.24 +0.2 5,125,446 - Psyr_4298 0.24 +0.9 5,125,446 - Psyr_4298 0.24 -0.1 5,125,446 - Psyr_4298 0.24 -1.1 5,125,446 - Psyr_4298 0.24 -0.9 5,125,446 - Psyr_4298 0.24 +1.2 5,125,446 - Psyr_4298 0.24 -0.5 5,125,446 - Psyr_4298 0.24 -0.1 5,125,446 - Psyr_4298 0.24 -0.0 5,125,446 - Psyr_4298 0.24 +1.0 5,125,446 - Psyr_4298 0.24 -0.6 5,125,446 - Psyr_4298 0.24 +0.5 5,125,446 - Psyr_4298 0.24 +0.6 5,125,446 - Psyr_4298 0.24 +0.9 5,125,446 - Psyr_4298 0.24 +1.2 5,125,446 - Psyr_4298 0.24 +1.1 5,125,446 - Psyr_4298 0.24 -0.9 5,125,446 - Psyr_4298 0.24 +0.9 5,125,446 - Psyr_4298 0.24 -1.1 5,125,447 + Psyr_4298 0.24 +1.3 5,125,447 + Psyr_4298 0.24 +0.7 5,125,447 + Psyr_4298 0.24 -0.9 5,125,447 + Psyr_4298 0.24 -0.1 5,125,447 + Psyr_4298 0.24 +0.5 5,125,447 + Psyr_4298 0.24 +1.0 5,125,448 - Psyr_4298 0.24 -0.5 5,125,448 - Psyr_4298 0.24 -1.5 5,125,448 - Psyr_4298 0.24 -0.9 5,125,448 - Psyr_4298 0.24 -1.5 5,125,448 - Psyr_4298 0.24 -0.2 5,125,448 - Psyr_4298 0.24 +0.3 5,125,467 - Psyr_4298 0.26 +2.5 5,125,486 + Psyr_4298 0.28 +0.5 5,125,486 + Psyr_4298 0.28 -0.4 5,125,486 + Psyr_4298 0.28 +0.2 5,125,487 - Psyr_4298 0.28 +1.5 5,125,487 - Psyr_4298 0.28 +0.7 5,125,520 + Psyr_4298 0.32 -0.4 5,125,687 + Psyr_4298 0.50 +0.0 5,125,687 + Psyr_4298 0.50 -1.1 5,125,981 + Psyr_4298 0.82 -0.4 5,125,981 + Psyr_4298 0.82 -0.1 5,125,981 + Psyr_4298 0.82 -1.0 5,125,981 + Psyr_4298 0.82 -0.4 5,125,981 + Psyr_4298 0.82 -0.9 5,125,981 + Psyr_4298 0.82 -0.1 5,125,981 + Psyr_4298 0.82 -1.2 5,125,982 - Psyr_4298 0.83 -0.0 5,125,982 - Psyr_4298 0.83 +0.0 5,125,982 - Psyr_4298 0.83 +0.3 5,125,982 - Psyr_4298 0.83 -1.1 5,125,982 - Psyr_4298 0.83 +0.0 5,126,065 + +0.3 5,126,065 + +0.6 5,126,065 + +0.6 5,126,065 + +0.2 5,126,065 + -0.2 5,126,066 - +0.9 5,126,066 - +0.3 5,126,066 - -0.7 5,126,069 + -2.4 5,126,070 - +0.5 5,126,087 - -0.1 5,126,087 - -0.6 5,126,146 - -1.6 5,126,164 + -0.3 5,126,175 + -0.5 5,126,175 + -0.5 5,126,176 - +0.2 5,126,176 - +0.2 5,126,180 + -0.4 5,126,181 - -0.8 5,126,202 + +1.7 5,126,203 - -0.6 5,126,203 - -1.3 5,126,253 + -0.6 5,126,321 - -0.9 5,126,321 - +0.0 5,126,321 - +1.2 5,126,321 - +0.5 5,126,324 + -0.4 5,126,324 + +2.0 5,126,324 + -0.1 5,126,324 + +0.9 5,126,324 + +0.4 5,126,324 + +1.1 5,126,324 + -1.3 5,126,324 + +0.3 5,126,325 - -1.6 5,126,325 - -0.4 5,126,325 - -0.6 5,126,325 - +0.0 5,126,325 - -1.6 5,126,325 - +0.7 5,126,325 - -0.3 5,126,325 - -1.9 5,126,436 + Psyr_4299 0.27 -1.0 5,126,437 - Psyr_4299 0.27 +0.4 5,126,437 - Psyr_4299 0.27 +0.4 5,126,463 - Psyr_4299 0.33 +0.6 5,126,553 - Psyr_4299 0.52 -0.2 5,126,553 - Psyr_4299 0.52 +1.3 5,126,553 - Psyr_4299 0.52 -0.2 5,126,553 - Psyr_4299 0.52 +0.7 5,126,617 - Psyr_4299 0.66 +0.9 5,126,744 + -0.1 5,126,744 + -0.5 5,126,744 + +0.3 5,126,744 + -0.0 5,126,745 - +1.4 5,127,094 + Psyr_4300 0.51 -0.5 5,127,094 + Psyr_4300 0.51 +1.5 5,127,095 - Psyr_4300 0.51 +0.2 5,127,248 + Psyr_4300 0.76 -0.3 5,127,248 + Psyr_4300 0.76 -1.0 5,127,339 - +0.1 5,127,383 + -1.2 5,127,384 - +0.3 5,127,384 - -0.0 5,127,384 - -0.9 5,127,384 - +0.3 5,127,384 - +1.1 5,127,384 - +0.8 5,127,411 - -0.1 5,127,411 - +0.8 5,127,500 - Psyr_4301 0.18 -0.5 5,127,669 - Psyr_4301 0.53 +0.6 5,127,670 + Psyr_4301 0.54 -0.2 5,127,671 - Psyr_4301 0.54 -0.1 5,127,671 - Psyr_4301 0.54 -0.8 5,127,671 - Psyr_4301 0.54 -1.5 5,127,671 - Psyr_4301 0.54 +0.7 5,127,671 - Psyr_4301 0.54 -0.1 5,127,671 - Psyr_4301 0.54 +1.5 5,127,671 - Psyr_4301 0.54 -0.2 5,127,671 - Psyr_4301 0.54 +0.6 5,127,671 - Psyr_4301 0.54 +0.2 5,127,671 - Psyr_4301 0.54 +1.5 5,127,709 - Psyr_4301 0.62 +0.6
Or see this region's nucleotide sequence