Experiment: KB with Harmalol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4181 and Psyr_4182 are separated by 59 nucleotides Psyr_4182 and Psyr_RNA63 are separated by 112 nucleotides Psyr_RNA63 and Psyr_RNA64 are separated by 95 nucleotides Psyr_RNA64 and Psyr_4183 are separated by 46 nucleotides Psyr_4183 and Psyr_4184 are separated by 4 nucleotides
Psyr_4181: Psyr_4181 - Transcription termination factor NusA:Transcription termination factor NusA, C-terminal duplication, at 4,974,119 to 4,975,600
_4181
Psyr_4182: Psyr_4182 - Protein of unknown function DUF150, at 4,975,660 to 4,976,136
_4182
Psyr_RNA63: Psyr_RNA63 - tRNA-Met, at 4,976,249 to 4,976,325
_RNA63
Psyr_RNA64: Psyr_RNA64 - tRNA-Leu, at 4,976,421 to 4,976,506
_RNA64
Psyr_4183: Psyr_4183 - protein translocase subunit secG, at 4,976,553 to 4,976,933
_4183
Psyr_4184: Psyr_4184 - triosephosphate isomerase, at 4,976,938 to 4,977,693
_4184
Position (kb) 4975
4976
4977 Strain fitness (log2 ratio) -2
-1
0
1 at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.203 kb on - strand at 4976.204 kb on - strand at 4976.214 kb on - strand at 4976.229 kb on - strand at 4976.305 kb on - strand, within Psyr_RNA63 at 4976.345 kb on - strand at 4976.345 kb on - strand at 4976.345 kb on - strand at 4976.347 kb on - strand at 4976.347 kb on - strand at 4976.347 kb on - strand at 4976.347 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.385 kb on - strand at 4976.555 kb on - strand at 4976.555 kb on - strand at 4976.555 kb on - strand at 4976.578 kb on - strand at 4976.659 kb on - strand, within Psyr_4183 at 4976.811 kb on - strand, within Psyr_4183
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM remove 4,976,203 - -0.3 4,976,203 - +0.6 4,976,203 - -0.1 4,976,203 - +0.2 4,976,203 - -0.7 4,976,203 - +0.5 4,976,203 - -1.1 4,976,203 - -2.6 4,976,203 - -0.4 4,976,204 - +1.2 4,976,214 - -0.3 4,976,229 - -0.6 4,976,305 - Psyr_RNA63 0.73 -0.3 4,976,345 - +1.1 4,976,345 - +1.4 4,976,345 - +0.8 4,976,347 - -0.6 4,976,347 - -1.1 4,976,347 - -0.5 4,976,347 - -1.4 4,976,385 - -1.3 4,976,385 - +0.5 4,976,385 - +0.3 4,976,385 - -0.8 4,976,385 - +0.6 4,976,385 - -0.3 4,976,555 - -0.6 4,976,555 - -1.1 4,976,555 - -2.7 4,976,578 - +0.4 4,976,659 - Psyr_4183 0.28 +0.8 4,976,811 - Psyr_4183 0.68 +1.1
Or see this region's nucleotide sequence