Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3970

Experiment: KB with Harmalol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3969 and Psyr_3970 are separated by 30 nucleotidesPsyr_3970 and Psyr_3971 are separated by 208 nucleotides Psyr_3969: Psyr_3969 - Putative ammonia monooxygenase, at 4,716,945 to 4,717,979 _3969 Psyr_3970: Psyr_3970 - Uracil-DNA glycosylase, at 4,718,010 to 4,718,702 _3970 Psyr_3971: Psyr_3971 - lipoprotein, putative, at 4,718,911 to 4,719,381 _3971 Position (kb) 4718 4719Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4717.186 kb on + strand, within Psyr_3969at 4717.187 kb on - strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.431 kb on + strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.432 kb on - strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.435 kb on + strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4717.436 kb on - strand, within Psyr_3969at 4718.062 kb on + strandat 4718.062 kb on + strandat 4718.063 kb on - strandat 4718.063 kb on - strandat 4718.107 kb on + strand, within Psyr_3970at 4718.107 kb on + strand, within Psyr_3970at 4718.107 kb on + strand, within Psyr_3970at 4718.108 kb on - strand, within Psyr_3970at 4718.407 kb on + strand, within Psyr_3970at 4718.407 kb on + strand, within Psyr_3970at 4718.407 kb on + strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.408 kb on - strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.629 kb on + strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.630 kb on - strand, within Psyr_3970at 4718.697 kb on - strandat 4718.706 kb on + strandat 4718.706 kb on + strandat 4718.707 kb on - strandat 4718.707 kb on - strandat 4718.838 kb on - strandat 4718.838 kb on - strandat 4718.838 kb on - strandat 4718.838 kb on - strandat 4719.153 kb on - strand, within Psyr_3971at 4719.153 kb on - strand, within Psyr_3971at 4719.153 kb on - strand, within Psyr_3971at 4719.170 kb on + strand, within Psyr_3971at 4719.170 kb on + strand, within Psyr_3971at 4719.171 kb on - strand, within Psyr_3971at 4719.188 kb on + strand, within Psyr_3971at 4719.188 kb on + strand, within Psyr_3971at 4719.188 kb on + strand, within Psyr_3971at 4719.189 kb on - strand, within Psyr_3971at 4719.189 kb on - strand, within Psyr_3971at 4719.191 kb on + strand, within Psyr_3971at 4719.191 kb on + strand, within Psyr_3971at 4719.191 kb on + strand, within Psyr_3971at 4719.192 kb on - strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.212 kb on + strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.213 kb on - strand, within Psyr_3971at 4719.230 kb on + strand, within Psyr_3971at 4719.230 kb on + strand, within Psyr_3971at 4719.231 kb on - strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.233 kb on + strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.234 kb on - strand, within Psyr_3971at 4719.237 kb on + strand, within Psyr_3971at 4719.293 kb on + strand, within Psyr_3971at 4719.293 kb on + strand, within Psyr_3971at 4719.294 kb on - strand, within Psyr_3971at 4719.294 kb on - strand, within Psyr_3971at 4719.294 kb on - strand, within Psyr_3971at 4719.308 kb on + strand, within Psyr_3971at 4719.308 kb on + strand, within Psyr_3971at 4719.360 kb on + strandat 4719.361 kb on - strandat 4719.377 kb on + strandat 4719.377 kb on + strandat 4719.378 kb on - strandat 4719.378 kb on - strandat 4719.480 kb on + strandat 4719.480 kb on + strandat 4719.510 kb on + strandat 4719.565 kb on - strandat 4719.578 kb on - strandat 4719.589 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM
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4,717,186 + Psyr_3969 0.23 +0.3
4,717,187 - Psyr_3969 0.23 -0.1
4,717,431 + Psyr_3969 0.47 -0.0
4,717,431 + Psyr_3969 0.47 -0.2
4,717,431 + Psyr_3969 0.47 -2.1
4,717,431 + Psyr_3969 0.47 -0.1
4,717,432 - Psyr_3969 0.47 -1.9
4,717,432 - Psyr_3969 0.47 -0.3
4,717,432 - Psyr_3969 0.47 +0.6
4,717,432 - Psyr_3969 0.47 -0.7
4,717,432 - Psyr_3969 0.47 -1.7
4,717,432 - Psyr_3969 0.47 -0.1
4,717,435 + Psyr_3969 0.47 +0.1
4,717,435 + Psyr_3969 0.47 -2.1
4,717,435 + Psyr_3969 0.47 +0.5
4,717,435 + Psyr_3969 0.47 -0.4
4,717,436 - Psyr_3969 0.47 +1.1
4,717,436 - Psyr_3969 0.47 +0.3
4,717,436 - Psyr_3969 0.47 +0.6
4,718,062 + -0.9
4,718,062 + +1.1
4,718,063 - +0.8
4,718,063 - +0.8
4,718,107 + Psyr_3970 0.14 -0.3
4,718,107 + Psyr_3970 0.14 +0.9
4,718,107 + Psyr_3970 0.14 -1.2
4,718,108 - Psyr_3970 0.14 +0.7
4,718,407 + Psyr_3970 0.57 -0.7
4,718,407 + Psyr_3970 0.57 -2.0
4,718,407 + Psyr_3970 0.57 +0.3
4,718,408 - Psyr_3970 0.57 +0.2
4,718,408 - Psyr_3970 0.57 +0.4
4,718,408 - Psyr_3970 0.57 +1.0
4,718,408 - Psyr_3970 0.57 -0.9
4,718,408 - Psyr_3970 0.57 +0.9
4,718,408 - Psyr_3970 0.57 -1.1
4,718,629 + Psyr_3970 0.89 -0.7
4,718,629 + Psyr_3970 0.89 -0.2
4,718,629 + Psyr_3970 0.89 -1.3
4,718,629 + Psyr_3970 0.89 +0.9
4,718,629 + Psyr_3970 0.89 +1.2
4,718,629 + Psyr_3970 0.89 -0.4
4,718,629 + Psyr_3970 0.89 +0.2
4,718,629 + Psyr_3970 0.89 +0.7
4,718,629 + Psyr_3970 0.89 +0.6
4,718,629 + Psyr_3970 0.89 +1.5
4,718,629 + Psyr_3970 0.89 +0.6
4,718,629 + Psyr_3970 0.89 -0.7
4,718,629 + Psyr_3970 0.89 -0.6
4,718,629 + Psyr_3970 0.89 +0.6
4,718,630 - Psyr_3970 0.89 -0.1
4,718,630 - Psyr_3970 0.89 -0.5
4,718,630 - Psyr_3970 0.89 -0.6
4,718,630 - Psyr_3970 0.89 -0.4
4,718,630 - Psyr_3970 0.89 -2.3
4,718,630 - Psyr_3970 0.89 +1.4
4,718,630 - Psyr_3970 0.89 -0.3
4,718,630 - Psyr_3970 0.89 -0.3
4,718,630 - Psyr_3970 0.89 -0.3
4,718,630 - Psyr_3970 0.89 -0.2
4,718,630 - Psyr_3970 0.89 -1.3
4,718,630 - Psyr_3970 0.89 +0.0
4,718,630 - Psyr_3970 0.89 -0.9
4,718,630 - Psyr_3970 0.89 -1.0
4,718,697 - -0.3
4,718,706 + +0.5
4,718,706 + +0.2
4,718,707 - -1.0
4,718,707 - +0.7
4,718,838 - +0.4
4,718,838 - -0.1
4,718,838 - -0.1
4,718,838 - -1.0
4,719,153 - Psyr_3971 0.51 -0.3
4,719,153 - Psyr_3971 0.51 +0.3
4,719,153 - Psyr_3971 0.51 -0.4
4,719,170 + Psyr_3971 0.55 -0.4
4,719,170 + Psyr_3971 0.55 -0.0
4,719,171 - Psyr_3971 0.55 +1.4
4,719,188 + Psyr_3971 0.59 -0.6
4,719,188 + Psyr_3971 0.59 +0.8
4,719,188 + Psyr_3971 0.59 +0.2
4,719,189 - Psyr_3971 0.59 -1.2
4,719,189 - Psyr_3971 0.59 -0.7
4,719,191 + Psyr_3971 0.59 -1.7
4,719,191 + Psyr_3971 0.59 +0.5
4,719,191 + Psyr_3971 0.59 +0.7
4,719,192 - Psyr_3971 0.60 +2.7
4,719,212 + Psyr_3971 0.64 +0.7
4,719,212 + Psyr_3971 0.64 +0.7
4,719,212 + Psyr_3971 0.64 -0.6
4,719,212 + Psyr_3971 0.64 -2.3
4,719,212 + Psyr_3971 0.64 +0.0
4,719,212 + Psyr_3971 0.64 -1.9
4,719,212 + Psyr_3971 0.64 +0.9
4,719,212 + Psyr_3971 0.64 +1.3
4,719,212 + Psyr_3971 0.64 -0.9
4,719,212 + Psyr_3971 0.64 +0.7
4,719,212 + Psyr_3971 0.64 -1.6
4,719,212 + Psyr_3971 0.64 +0.8
4,719,212 + Psyr_3971 0.64 -1.1
4,719,212 + Psyr_3971 0.64 -2.9
4,719,213 - Psyr_3971 0.64 -0.4
4,719,213 - Psyr_3971 0.64 -0.2
4,719,213 - Psyr_3971 0.64 +0.6
4,719,213 - Psyr_3971 0.64 -1.3
4,719,213 - Psyr_3971 0.64 +0.2
4,719,213 - Psyr_3971 0.64 +1.0
4,719,213 - Psyr_3971 0.64 +0.4
4,719,213 - Psyr_3971 0.64 -0.7
4,719,213 - Psyr_3971 0.64 +0.3
4,719,213 - Psyr_3971 0.64 -0.5
4,719,213 - Psyr_3971 0.64 +0.9
4,719,230 + Psyr_3971 0.68 +0.6
4,719,230 + Psyr_3971 0.68 +0.7
4,719,231 - Psyr_3971 0.68 +0.4
4,719,233 + Psyr_3971 0.68 +1.5
4,719,233 + Psyr_3971 0.68 -0.7
4,719,233 + Psyr_3971 0.68 -0.2
4,719,233 + Psyr_3971 0.68 -0.3
4,719,233 + Psyr_3971 0.68 -0.8
4,719,233 + Psyr_3971 0.68 +1.4
4,719,234 - Psyr_3971 0.69 +1.0
4,719,234 - Psyr_3971 0.69 +0.9
4,719,234 - Psyr_3971 0.69 +0.8
4,719,234 - Psyr_3971 0.69 +0.7
4,719,234 - Psyr_3971 0.69 -0.2
4,719,234 - Psyr_3971 0.69 -0.4
4,719,234 - Psyr_3971 0.69 +0.5
4,719,234 - Psyr_3971 0.69 -1.3
4,719,234 - Psyr_3971 0.69 -1.1
4,719,234 - Psyr_3971 0.69 +0.0
4,719,237 + Psyr_3971 0.69 -0.1
4,719,293 + Psyr_3971 0.81 +0.8
4,719,293 + Psyr_3971 0.81 -0.0
4,719,294 - Psyr_3971 0.81 -0.7
4,719,294 - Psyr_3971 0.81 -1.0
4,719,294 - Psyr_3971 0.81 -0.4
4,719,308 + Psyr_3971 0.84 -0.2
4,719,308 + Psyr_3971 0.84 +1.3
4,719,360 + +0.4
4,719,361 - +0.6
4,719,377 + +1.0
4,719,377 + -0.8
4,719,378 - -0.4
4,719,378 - -0.6
4,719,480 + -0.0
4,719,480 + -1.3
4,719,510 + -2.1
4,719,565 - -0.9
4,719,578 - -0.6
4,719,589 - -1.6

Or see this region's nucleotide sequence