Experiment: KB with Harmalol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3917 and Psyr_3918 are separated by 40 nucleotides Psyr_3918 and Psyr_3919 overlap by 4 nucleotides Psyr_3919 and Psyr_3920 are separated by 151 nucleotides Psyr_3920 and Psyr_3921 are separated by 294 nucleotides
Psyr_3917: Psyr_3917 - transcriptional regulator, LysR family, at 4,660,539 to 4,661,456
_3917
Psyr_3918: Psyr_3918 - NUDIX hydrolase, at 4,661,497 to 4,661,907
_3918
Psyr_3919: Psyr_3919 - D-alanine--D-alanine ligase, at 4,661,904 to 4,662,995
_3919
Psyr_3920: Psyr_3920 - LSU ribosomal protein L31P, at 4,663,147 to 4,663,428
_3920
Psyr_3921: Psyr_3921 - membrane protein, putative, at 4,663,723 to 4,664,853
_3921
Position (kb) 4661
4662
4663 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.010 kb on + strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.011 kb on - strand, within Psyr_3917 at 4661.024 kb on + strand, within Psyr_3917 at 4661.024 kb on + strand, within Psyr_3917 at 4661.025 kb on - strand, within Psyr_3917 at 4661.025 kb on - strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.028 kb on + strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.029 kb on - strand, within Psyr_3917 at 4661.079 kb on + strand, within Psyr_3917 at 4661.079 kb on + strand, within Psyr_3917 at 4661.080 kb on - strand, within Psyr_3917 at 4661.122 kb on - strand, within Psyr_3917 at 4661.194 kb on + strand, within Psyr_3917 at 4661.194 kb on + strand, within Psyr_3917 at 4661.194 kb on + strand, within Psyr_3917 at 4661.195 kb on - strand, within Psyr_3917 at 4661.283 kb on + strand, within Psyr_3917 at 4661.283 kb on + strand, within Psyr_3917 at 4661.284 kb on - strand, within Psyr_3917 at 4661.298 kb on + strand, within Psyr_3917 at 4661.346 kb on + strand, within Psyr_3917 at 4661.346 kb on + strand, within Psyr_3917 at 4661.347 kb on - strand, within Psyr_3917 at 4661.347 kb on - strand, within Psyr_3917 at 4661.347 kb on - strand, within Psyr_3917 at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.382 kb on + strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.383 kb on - strand at 4661.440 kb on + strand at 4661.440 kb on + strand at 4661.441 kb on - strand at 4661.441 kb on - strand at 4661.502 kb on + strand at 4661.503 kb on - strand at 4661.525 kb on + strand at 4661.526 kb on - strand at 4661.526 kb on - strand at 4661.651 kb on + strand, within Psyr_3918 at 4661.651 kb on + strand, within Psyr_3918 at 4661.651 kb on + strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.652 kb on - strand, within Psyr_3918 at 4661.989 kb on + strand at 4661.990 kb on - strand at 4661.990 kb on - strand at 4662.022 kb on + strand, within Psyr_3919 at 4662.022 kb on + strand, within Psyr_3919 at 4662.023 kb on - strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.136 kb on + strand, within Psyr_3919 at 4662.137 kb on - strand, within Psyr_3919 at 4662.137 kb on - strand, within Psyr_3919 at 4662.226 kb on + strand, within Psyr_3919 at 4662.227 kb on - strand, within Psyr_3919 at 4662.227 kb on - strand, within Psyr_3919 at 4662.244 kb on + strand, within Psyr_3919 at 4662.244 kb on + strand, within Psyr_3919 at 4662.244 kb on + strand, within Psyr_3919 at 4662.245 kb on - strand, within Psyr_3919 at 4662.245 kb on - strand, within Psyr_3919 at 4662.693 kb on + strand, within Psyr_3919 at 4662.694 kb on - strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.792 kb on + strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.793 kb on - strand, within Psyr_3919 at 4662.829 kb on + strand, within Psyr_3919 at 4662.830 kb on - strand, within Psyr_3919 at 4662.893 kb on - strand at 4663.003 kb on - strand at 4663.028 kb on + strand at 4663.047 kb on + strand at 4663.047 kb on + strand at 4663.048 kb on - strand at 4663.055 kb on + strand at 4663.056 kb on - strand at 4663.056 kb on - strand at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.256 kb on + strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.257 kb on - strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.295 kb on + strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.296 kb on - strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.301 kb on + strand, within Psyr_3920 at 4663.302 kb on - strand, within Psyr_3920 at 4663.302 kb on - strand, within Psyr_3920 at 4663.305 kb on + strand, within Psyr_3920 at 4663.305 kb on + strand, within Psyr_3920 at 4663.342 kb on + strand, within Psyr_3920 at 4663.457 kb on + strand at 4663.458 kb on - strand at 4663.461 kb on + strand at 4663.462 kb on - strand at 4663.463 kb on + strand at 4663.555 kb on - strand at 4663.590 kb on + strand at 4663.591 kb on - strand at 4663.591 kb on - strand at 4663.593 kb on + strand at 4663.594 kb on - strand at 4663.594 kb on - strand at 4663.686 kb on + strand at 4663.687 kb on - strand at 4663.693 kb on - strand at 4663.693 kb on - strand at 4663.693 kb on - strand at 4663.728 kb on + strand at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.969 kb on + strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.970 kb on - strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.980 kb on + strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921 at 4663.981 kb on - strand, within Psyr_3921
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM remove 4,661,010 + Psyr_3917 0.51 +2.3 4,661,010 + Psyr_3917 0.51 +1.3 4,661,010 + Psyr_3917 0.51 +0.3 4,661,010 + Psyr_3917 0.51 -0.2 4,661,010 + Psyr_3917 0.51 +0.2 4,661,010 + Psyr_3917 0.51 +1.0 4,661,010 + Psyr_3917 0.51 -1.3 4,661,010 + Psyr_3917 0.51 -0.5 4,661,011 - Psyr_3917 0.51 +0.9 4,661,011 - Psyr_3917 0.51 -1.0 4,661,011 - Psyr_3917 0.51 -0.6 4,661,011 - Psyr_3917 0.51 +0.8 4,661,011 - Psyr_3917 0.51 +0.8 4,661,011 - Psyr_3917 0.51 -1.8 4,661,011 - Psyr_3917 0.51 -0.3 4,661,011 - Psyr_3917 0.51 -0.2 4,661,011 - Psyr_3917 0.51 +0.2 4,661,011 - Psyr_3917 0.51 +0.8 4,661,011 - Psyr_3917 0.51 +0.9 4,661,011 - Psyr_3917 0.51 +0.3 4,661,011 - Psyr_3917 0.51 +0.1 4,661,011 - Psyr_3917 0.51 +0.3 4,661,011 - Psyr_3917 0.51 -1.1 4,661,024 + Psyr_3917 0.53 +1.9 4,661,024 + Psyr_3917 0.53 -1.3 4,661,025 - Psyr_3917 0.53 +1.4 4,661,025 - Psyr_3917 0.53 -0.0 4,661,028 + Psyr_3917 0.53 +0.0 4,661,028 + Psyr_3917 0.53 +0.6 4,661,028 + Psyr_3917 0.53 +0.7 4,661,028 + Psyr_3917 0.53 -0.9 4,661,028 + Psyr_3917 0.53 +0.4 4,661,028 + Psyr_3917 0.53 +1.0 4,661,028 + Psyr_3917 0.53 +0.1 4,661,029 - Psyr_3917 0.53 +1.0 4,661,029 - Psyr_3917 0.53 +0.2 4,661,029 - Psyr_3917 0.53 +1.0 4,661,029 - Psyr_3917 0.53 -0.9 4,661,029 - Psyr_3917 0.53 -2.2 4,661,029 - Psyr_3917 0.53 +0.2 4,661,079 + Psyr_3917 0.59 -1.2 4,661,079 + Psyr_3917 0.59 +0.0 4,661,080 - Psyr_3917 0.59 -0.5 4,661,122 - Psyr_3917 0.64 -0.0 4,661,194 + Psyr_3917 0.71 +0.7 4,661,194 + Psyr_3917 0.71 -1.4 4,661,194 + Psyr_3917 0.71 -0.3 4,661,195 - Psyr_3917 0.71 -0.7 4,661,283 + Psyr_3917 0.81 -1.3 4,661,283 + Psyr_3917 0.81 +0.3 4,661,284 - Psyr_3917 0.81 +1.1 4,661,298 + Psyr_3917 0.83 -2.3 4,661,346 + Psyr_3917 0.88 -0.5 4,661,346 + Psyr_3917 0.88 -0.8 4,661,347 - Psyr_3917 0.88 +0.7 4,661,347 - Psyr_3917 0.88 -0.4 4,661,347 - Psyr_3917 0.88 +0.9 4,661,382 + +0.1 4,661,382 + -0.3 4,661,382 + -0.6 4,661,382 + +0.4 4,661,382 + +1.5 4,661,382 + -1.2 4,661,382 + +1.4 4,661,382 + +0.4 4,661,382 + -1.3 4,661,383 - +0.8 4,661,383 - -1.0 4,661,383 - +0.6 4,661,383 - -1.1 4,661,383 - -1.2 4,661,383 - +0.3 4,661,440 + -0.5 4,661,440 + -0.9 4,661,441 - +0.0 4,661,441 - -0.3 4,661,502 + -0.8 4,661,503 - +1.4 4,661,525 + +1.9 4,661,526 - +0.1 4,661,526 - -0.8 4,661,651 + Psyr_3918 0.37 +0.8 4,661,651 + Psyr_3918 0.37 +0.1 4,661,651 + Psyr_3918 0.37 -0.4 4,661,652 - Psyr_3918 0.38 -0.5 4,661,652 - Psyr_3918 0.38 +1.3 4,661,652 - Psyr_3918 0.38 -0.6 4,661,652 - Psyr_3918 0.38 -0.3 4,661,652 - Psyr_3918 0.38 -0.9 4,661,652 - Psyr_3918 0.38 -0.9 4,661,652 - Psyr_3918 0.38 -1.5 4,661,652 - Psyr_3918 0.38 -0.3 4,661,989 + +0.1 4,661,990 - -0.0 4,661,990 - -0.1 4,662,022 + Psyr_3919 0.11 +0.2 4,662,022 + Psyr_3919 0.11 +2.5 4,662,023 - Psyr_3919 0.11 -0.4 4,662,136 + Psyr_3919 0.21 -0.1 4,662,136 + Psyr_3919 0.21 +1.4 4,662,136 + Psyr_3919 0.21 +0.9 4,662,136 + Psyr_3919 0.21 +1.7 4,662,137 - Psyr_3919 0.21 +0.3 4,662,137 - Psyr_3919 0.21 -0.3 4,662,226 + Psyr_3919 0.29 +1.0 4,662,227 - Psyr_3919 0.30 -0.6 4,662,227 - Psyr_3919 0.30 +1.7 4,662,244 + Psyr_3919 0.31 +0.7 4,662,244 + Psyr_3919 0.31 -0.1 4,662,244 + Psyr_3919 0.31 -0.0 4,662,245 - Psyr_3919 0.31 +1.4 4,662,245 - Psyr_3919 0.31 +1.9 4,662,693 + Psyr_3919 0.72 -0.4 4,662,694 - Psyr_3919 0.72 -0.7 4,662,792 + Psyr_3919 0.81 +1.3 4,662,792 + Psyr_3919 0.81 +1.7 4,662,792 + Psyr_3919 0.81 +2.3 4,662,793 - Psyr_3919 0.81 -0.4 4,662,793 - Psyr_3919 0.81 +0.3 4,662,793 - Psyr_3919 0.81 +0.3 4,662,829 + Psyr_3919 0.85 +0.6 4,662,830 - Psyr_3919 0.85 +1.1 4,662,893 - +0.1 4,663,003 - +0.4 4,663,028 + +0.1 4,663,047 + -0.3 4,663,047 + -1.1 4,663,048 - -0.6 4,663,055 + -0.5 4,663,056 - +1.7 4,663,056 - +0.8 4,663,256 + Psyr_3920 0.39 -0.8 4,663,256 + Psyr_3920 0.39 -0.3 4,663,256 + Psyr_3920 0.39 -0.1 4,663,256 + Psyr_3920 0.39 -0.7 4,663,256 + Psyr_3920 0.39 +0.4 4,663,257 - Psyr_3920 0.39 +0.2 4,663,257 - Psyr_3920 0.39 +0.9 4,663,257 - Psyr_3920 0.39 -0.3 4,663,295 + Psyr_3920 0.52 -1.8 4,663,295 + Psyr_3920 0.52 +1.1 4,663,295 + Psyr_3920 0.52 +0.5 4,663,296 - Psyr_3920 0.53 +0.1 4,663,296 - Psyr_3920 0.53 -0.0 4,663,296 - Psyr_3920 0.53 -0.1 4,663,301 + Psyr_3920 0.55 +1.2 4,663,301 + Psyr_3920 0.55 -0.7 4,663,301 + Psyr_3920 0.55 -0.1 4,663,301 + Psyr_3920 0.55 -0.1 4,663,301 + Psyr_3920 0.55 -0.6 4,663,301 + Psyr_3920 0.55 +0.3 4,663,301 + Psyr_3920 0.55 +0.7 4,663,302 - Psyr_3920 0.55 +1.1 4,663,302 - Psyr_3920 0.55 -2.3 4,663,305 + Psyr_3920 0.56 +1.2 4,663,305 + Psyr_3920 0.56 +0.5 4,663,342 + Psyr_3920 0.69 -0.7 4,663,457 + -3.2 4,663,458 - -2.3 4,663,461 + -0.8 4,663,462 - -1.1 4,663,463 + -0.6 4,663,555 - +0.5 4,663,590 + -0.7 4,663,591 - +0.4 4,663,591 - +0.2 4,663,593 + +0.2 4,663,594 - +0.2 4,663,594 - -0.2 4,663,686 + -0.8 4,663,687 - -1.0 4,663,693 - +1.3 4,663,693 - +0.6 4,663,693 - -0.4 4,663,728 + +1.4 4,663,969 + Psyr_3921 0.22 +0.3 4,663,969 + Psyr_3921 0.22 -0.1 4,663,969 + Psyr_3921 0.22 -0.6 4,663,969 + Psyr_3921 0.22 +0.8 4,663,969 + Psyr_3921 0.22 -1.4 4,663,969 + Psyr_3921 0.22 -0.6 4,663,969 + Psyr_3921 0.22 +0.3 4,663,969 + Psyr_3921 0.22 -1.5 4,663,969 + Psyr_3921 0.22 +0.2 4,663,969 + Psyr_3921 0.22 +1.0 4,663,969 + Psyr_3921 0.22 +0.8 4,663,969 + Psyr_3921 0.22 +0.0 4,663,969 + Psyr_3921 0.22 +1.5 4,663,969 + Psyr_3921 0.22 -1.1 4,663,969 + Psyr_3921 0.22 -0.1 4,663,969 + Psyr_3921 0.22 +0.7 4,663,970 - Psyr_3921 0.22 -0.7 4,663,970 - Psyr_3921 0.22 -0.0 4,663,970 - Psyr_3921 0.22 +1.0 4,663,970 - Psyr_3921 0.22 -0.0 4,663,970 - Psyr_3921 0.22 -0.5 4,663,970 - Psyr_3921 0.22 +0.5 4,663,970 - Psyr_3921 0.22 +0.3 4,663,970 - Psyr_3921 0.22 +0.3 4,663,970 - Psyr_3921 0.22 -0.8 4,663,970 - Psyr_3921 0.22 -0.7 4,663,970 - Psyr_3921 0.22 +0.6 4,663,970 - Psyr_3921 0.22 +0.3 4,663,970 - Psyr_3921 0.22 +0.1 4,663,970 - Psyr_3921 0.22 +0.8 4,663,980 + Psyr_3921 0.23 +0.3 4,663,980 + Psyr_3921 0.23 +0.4 4,663,980 + Psyr_3921 0.23 +1.1 4,663,981 - Psyr_3921 0.23 +0.1 4,663,981 - Psyr_3921 0.23 +0.4 4,663,981 - Psyr_3921 0.23 +0.7 4,663,981 - Psyr_3921 0.23 -1.3 4,663,981 - Psyr_3921 0.23 +0.7 4,663,981 - Psyr_3921 0.23 +0.2
Or see this region's nucleotide sequence