Experiment: KB with Harmalol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3786 and Psyr_3787 are separated by 608 nucleotides Psyr_3787 and Psyr_3788 are separated by 144 nucleotides Psyr_3788 and Psyr_3789 are separated by 69 nucleotides
Psyr_3786: Psyr_3786 - RNA binding S1, at 4,501,896 to 4,502,732
_3786
Psyr_3787: Psyr_3787 - conserved hypothetical protein, at 4,503,341 to 4,503,907
_3787
Psyr_3788: Psyr_3788 - Conserved hypothetical protein 2001, at 4,504,052 to 4,504,780
_3788
Psyr_3789: Psyr_3789 - lipoprotein, putative, at 4,504,850 to 4,505,713
_3789
Position (kb) 4503
4504 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4502.375 kb on - strand, within Psyr_3786 at 4502.392 kb on + strand, within Psyr_3786 at 4502.392 kb on + strand, within Psyr_3786 at 4502.428 kb on + strand, within Psyr_3786 at 4502.469 kb on + strand, within Psyr_3786 at 4502.469 kb on + strand, within Psyr_3786 at 4502.469 kb on + strand, within Psyr_3786 at 4502.470 kb on - strand, within Psyr_3786 at 4502.470 kb on - strand, within Psyr_3786 at 4502.470 kb on - strand, within Psyr_3786 at 4502.470 kb on - strand, within Psyr_3786 at 4502.572 kb on + strand, within Psyr_3786 at 4502.572 kb on + strand, within Psyr_3786 at 4502.572 kb on + strand, within Psyr_3786 at 4502.572 kb on + strand, within Psyr_3786 at 4502.573 kb on - strand, within Psyr_3786 at 4502.573 kb on - strand, within Psyr_3786 at 4502.626 kb on + strand, within Psyr_3786 at 4502.627 kb on - strand, within Psyr_3786 at 4502.671 kb on + strand at 4502.671 kb on + strand at 4502.714 kb on - strand at 4502.714 kb on - strand at 4502.714 kb on - strand at 4502.749 kb on + strand at 4502.749 kb on + strand at 4502.766 kb on - strand at 4502.813 kb on - strand at 4503.022 kb on + strand at 4503.022 kb on + strand at 4503.022 kb on + strand at 4503.023 kb on - strand at 4503.029 kb on - strand at 4503.029 kb on - strand at 4503.036 kb on + strand at 4503.036 kb on + strand at 4503.036 kb on + strand at 4503.036 kb on + strand at 4503.037 kb on - strand at 4503.037 kb on - strand at 4503.276 kb on + strand at 4503.319 kb on + strand at 4503.320 kb on - strand at 4503.340 kb on + strand at 4503.341 kb on - strand at 4503.341 kb on - strand at 4503.341 kb on - strand at 4503.429 kb on - strand, within Psyr_3787 at 4503.429 kb on - strand, within Psyr_3787 at 4503.575 kb on + strand, within Psyr_3787 at 4503.576 kb on - strand, within Psyr_3787 at 4503.641 kb on + strand, within Psyr_3787 at 4503.651 kb on + strand, within Psyr_3787 at 4503.652 kb on - strand, within Psyr_3787 at 4503.800 kb on + strand, within Psyr_3787 at 4503.801 kb on - strand, within Psyr_3787 at 4503.970 kb on + strand at 4503.971 kb on - strand at 4504.069 kb on - strand at 4504.069 kb on - strand at 4504.069 kb on - strand at 4504.262 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.325 kb on + strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.326 kb on - strand, within Psyr_3788 at 4504.365 kb on - strand, within Psyr_3788 at 4504.365 kb on - strand, within Psyr_3788 at 4504.392 kb on - strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.427 kb on + strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.428 kb on - strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.676 kb on + strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.677 kb on - strand, within Psyr_3788 at 4504.715 kb on + strand at 4504.716 kb on - strand at 4504.757 kb on - strand at 4504.811 kb on - strand at 4504.860 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM remove 4,502,375 - Psyr_3786 0.57 +0.1 4,502,392 + Psyr_3786 0.59 +1.2 4,502,392 + Psyr_3786 0.59 +0.7 4,502,428 + Psyr_3786 0.64 -1.0 4,502,469 + Psyr_3786 0.68 -0.1 4,502,469 + Psyr_3786 0.68 -0.4 4,502,469 + Psyr_3786 0.68 -0.6 4,502,470 - Psyr_3786 0.69 -1.3 4,502,470 - Psyr_3786 0.69 +0.5 4,502,470 - Psyr_3786 0.69 -2.0 4,502,470 - Psyr_3786 0.69 +0.7 4,502,572 + Psyr_3786 0.81 -0.9 4,502,572 + Psyr_3786 0.81 +2.3 4,502,572 + Psyr_3786 0.81 -0.7 4,502,572 + Psyr_3786 0.81 +0.5 4,502,573 - Psyr_3786 0.81 -0.9 4,502,573 - Psyr_3786 0.81 +2.3 4,502,626 + Psyr_3786 0.87 -0.1 4,502,627 - Psyr_3786 0.87 +0.1 4,502,671 + +3.0 4,502,671 + -0.1 4,502,714 - +0.4 4,502,714 - -1.8 4,502,714 - -0.2 4,502,749 + +0.5 4,502,749 + +0.3 4,502,766 - +0.3 4,502,813 - -0.5 4,503,022 + +0.1 4,503,022 + -0.2 4,503,022 + +0.1 4,503,023 - +0.7 4,503,029 - -1.3 4,503,029 - +0.5 4,503,036 + -4.2 4,503,036 + +0.7 4,503,036 + -0.3 4,503,036 + -0.9 4,503,037 - -0.5 4,503,037 - -1.3 4,503,276 + -0.9 4,503,319 + +0.2 4,503,320 - -1.4 4,503,340 + -0.8 4,503,341 - +0.4 4,503,341 - -0.3 4,503,341 - -2.6 4,503,429 - Psyr_3787 0.16 -0.4 4,503,429 - Psyr_3787 0.16 -0.6 4,503,575 + Psyr_3787 0.41 +0.6 4,503,576 - Psyr_3787 0.41 +0.7 4,503,641 + Psyr_3787 0.53 +0.9 4,503,651 + Psyr_3787 0.55 +0.0 4,503,652 - Psyr_3787 0.55 +0.9 4,503,800 + Psyr_3787 0.81 +0.4 4,503,801 - Psyr_3787 0.81 +0.7 4,503,970 + -0.4 4,503,971 - +0.9 4,504,069 - +0.1 4,504,069 - -0.6 4,504,069 - +0.3 4,504,262 + Psyr_3788 0.29 +0.7 4,504,325 + Psyr_3788 0.37 +0.2 4,504,325 + Psyr_3788 0.37 +0.2 4,504,325 + Psyr_3788 0.37 -0.3 4,504,325 + Psyr_3788 0.37 +0.7 4,504,325 + Psyr_3788 0.37 -0.6 4,504,325 + Psyr_3788 0.37 -0.8 4,504,325 + Psyr_3788 0.37 +0.7 4,504,325 + Psyr_3788 0.37 +0.5 4,504,326 - Psyr_3788 0.38 -2.0 4,504,326 - Psyr_3788 0.38 +0.4 4,504,326 - Psyr_3788 0.38 -2.3 4,504,326 - Psyr_3788 0.38 +3.7 4,504,326 - Psyr_3788 0.38 +0.1 4,504,365 - Psyr_3788 0.43 +0.4 4,504,365 - Psyr_3788 0.43 -0.3 4,504,392 - Psyr_3788 0.47 +0.3 4,504,427 + Psyr_3788 0.51 +0.5 4,504,427 + Psyr_3788 0.51 +1.2 4,504,427 + Psyr_3788 0.51 -1.9 4,504,427 + Psyr_3788 0.51 -1.4 4,504,427 + Psyr_3788 0.51 -2.3 4,504,428 - Psyr_3788 0.52 +0.2 4,504,428 - Psyr_3788 0.52 +1.5 4,504,428 - Psyr_3788 0.52 -1.3 4,504,428 - Psyr_3788 0.52 -0.1 4,504,428 - Psyr_3788 0.52 -2.1 4,504,428 - Psyr_3788 0.52 +0.3 4,504,428 - Psyr_3788 0.52 -1.8 4,504,676 + Psyr_3788 0.86 -0.1 4,504,676 + Psyr_3788 0.86 -1.3 4,504,676 + Psyr_3788 0.86 +0.0 4,504,676 + Psyr_3788 0.86 +0.4 4,504,676 + Psyr_3788 0.86 +0.1 4,504,676 + Psyr_3788 0.86 -1.3 4,504,676 + Psyr_3788 0.86 +0.0 4,504,676 + Psyr_3788 0.86 -0.6 4,504,676 + Psyr_3788 0.86 -0.7 4,504,676 + Psyr_3788 0.86 -1.8 4,504,676 + Psyr_3788 0.86 -0.3 4,504,676 + Psyr_3788 0.86 +0.4 4,504,676 + Psyr_3788 0.86 +0.5 4,504,676 + Psyr_3788 0.86 +0.7 4,504,677 - Psyr_3788 0.86 -0.9 4,504,677 - Psyr_3788 0.86 +0.3 4,504,677 - Psyr_3788 0.86 +1.1 4,504,677 - Psyr_3788 0.86 -0.5 4,504,677 - Psyr_3788 0.86 +0.3 4,504,677 - Psyr_3788 0.86 -0.2 4,504,677 - Psyr_3788 0.86 -0.2 4,504,715 + +0.1 4,504,716 - +1.7 4,504,757 - +0.7 4,504,811 - -0.2 4,504,860 + +0.4
Or see this region's nucleotide sequence