Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3399

Experiment: KB with Harmalol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3398 and Psyr_3399 overlap by 11 nucleotidesPsyr_3399 and Psyr_3400 are separated by 13 nucleotides Psyr_3398: Psyr_3398 - Alanine racemase, N-terminal, at 4,055,262 to 4,056,398 _3398 Psyr_3399: Psyr_3399 - Endoribonuclease L-PSP, at 4,056,388 to 4,056,786 _3399 Psyr_3400: Psyr_3400 - FAD dependent oxidoreductase, at 4,056,800 to 4,057,984 _3400 Position (kb) 4056 4057Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4055.508 kb on + strand, within Psyr_3398at 4055.509 kb on - strand, within Psyr_3398at 4055.509 kb on - strand, within Psyr_3398at 4055.509 kb on - strand, within Psyr_3398at 4055.509 kb on - strand, within Psyr_3398at 4055.509 kb on - strand, within Psyr_3398at 4055.597 kb on - strand, within Psyr_3398at 4055.787 kb on + strand, within Psyr_3398at 4055.787 kb on + strand, within Psyr_3398at 4055.788 kb on - strand, within Psyr_3398at 4055.788 kb on - strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.970 kb on + strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4055.971 kb on - strand, within Psyr_3398at 4056.339 kb on + strandat 4056.372 kb on - strandat 4056.628 kb on + strand, within Psyr_3399at 4056.628 kb on + strand, within Psyr_3399at 4056.629 kb on - strand, within Psyr_3399at 4056.629 kb on - strand, within Psyr_3399at 4056.629 kb on - strand, within Psyr_3399at 4056.629 kb on - strand, within Psyr_3399at 4056.771 kb on + strandat 4056.923 kb on + strand, within Psyr_3400at 4056.924 kb on - strand, within Psyr_3400at 4057.112 kb on + strand, within Psyr_3400at 4057.113 kb on - strand, within Psyr_3400at 4057.218 kb on - strand, within Psyr_3400at 4057.374 kb on + strand, within Psyr_3400at 4057.374 kb on + strand, within Psyr_3400at 4057.374 kb on + strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.375 kb on - strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.553 kb on + strand, within Psyr_3400at 4057.554 kb on - strand, within Psyr_3400at 4057.554 kb on - strand, within Psyr_3400at 4057.606 kb on + strand, within Psyr_3400at 4057.635 kb on - strand, within Psyr_3400at 4057.635 kb on - strand, within Psyr_3400

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM
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4,055,508 + Psyr_3398 0.22 +0.6
4,055,509 - Psyr_3398 0.22 -0.4
4,055,509 - Psyr_3398 0.22 -1.0
4,055,509 - Psyr_3398 0.22 +1.5
4,055,509 - Psyr_3398 0.22 +0.5
4,055,509 - Psyr_3398 0.22 -1.1
4,055,597 - Psyr_3398 0.29 -0.0
4,055,787 + Psyr_3398 0.46 -0.6
4,055,787 + Psyr_3398 0.46 +1.1
4,055,788 - Psyr_3398 0.46 -0.3
4,055,788 - Psyr_3398 0.46 +0.1
4,055,970 + Psyr_3398 0.62 +0.1
4,055,970 + Psyr_3398 0.62 -1.2
4,055,970 + Psyr_3398 0.62 -0.6
4,055,970 + Psyr_3398 0.62 +1.4
4,055,970 + Psyr_3398 0.62 +1.3
4,055,970 + Psyr_3398 0.62 +0.5
4,055,970 + Psyr_3398 0.62 -0.6
4,055,970 + Psyr_3398 0.62 -1.1
4,055,970 + Psyr_3398 0.62 -0.1
4,055,970 + Psyr_3398 0.62 +0.3
4,055,970 + Psyr_3398 0.62 +0.1
4,055,970 + Psyr_3398 0.62 +0.5
4,055,971 - Psyr_3398 0.62 +0.5
4,055,971 - Psyr_3398 0.62 -1.0
4,055,971 - Psyr_3398 0.62 +1.9
4,055,971 - Psyr_3398 0.62 +0.9
4,055,971 - Psyr_3398 0.62 +1.0
4,055,971 - Psyr_3398 0.62 +0.4
4,055,971 - Psyr_3398 0.62 +0.0
4,055,971 - Psyr_3398 0.62 -3.0
4,055,971 - Psyr_3398 0.62 -0.4
4,055,971 - Psyr_3398 0.62 -0.7
4,055,971 - Psyr_3398 0.62 -0.6
4,055,971 - Psyr_3398 0.62 -0.9
4,055,971 - Psyr_3398 0.62 +0.7
4,056,339 + -1.0
4,056,372 - +0.1
4,056,628 + Psyr_3399 0.60 -0.0
4,056,628 + Psyr_3399 0.60 +0.5
4,056,629 - Psyr_3399 0.60 +0.7
4,056,629 - Psyr_3399 0.60 +0.4
4,056,629 - Psyr_3399 0.60 -0.2
4,056,629 - Psyr_3399 0.60 +0.5
4,056,771 + +0.0
4,056,923 + Psyr_3400 0.10 +0.0
4,056,924 - Psyr_3400 0.10 -2.0
4,057,112 + Psyr_3400 0.26 -1.3
4,057,113 - Psyr_3400 0.26 -1.1
4,057,218 - Psyr_3400 0.35 +2.6
4,057,374 + Psyr_3400 0.48 -0.1
4,057,374 + Psyr_3400 0.48 +4.2
4,057,374 + Psyr_3400 0.48 +0.4
4,057,375 - Psyr_3400 0.49 +0.8
4,057,375 - Psyr_3400 0.49 +2.1
4,057,375 - Psyr_3400 0.49 -0.4
4,057,375 - Psyr_3400 0.49 -0.6
4,057,375 - Psyr_3400 0.49 -1.2
4,057,375 - Psyr_3400 0.49 -0.0
4,057,553 + Psyr_3400 0.64 +0.1
4,057,553 + Psyr_3400 0.64 +1.3
4,057,553 + Psyr_3400 0.64 -0.1
4,057,553 + Psyr_3400 0.64 -0.1
4,057,553 + Psyr_3400 0.64 -2.0
4,057,554 - Psyr_3400 0.64 +0.8
4,057,554 - Psyr_3400 0.64 +1.9
4,057,606 + Psyr_3400 0.68 +0.2
4,057,635 - Psyr_3400 0.70 -0.5
4,057,635 - Psyr_3400 0.70 +0.3

Or see this region's nucleotide sequence