Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2644

Experiment: KB with Harmalol 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Harmalol 10 mM
3,211,800	+		Psyr_2643	0.67	+0.4
3,211,801	-		Psyr_2643	0.67	-0.1
3,211,805	-		Psyr_2643	0.67	-1.5
3,211,826	+		Psyr_2643	0.69	-2.1
3,211,827	-		Psyr_2643	0.69	-0.4
3,211,880	+		Psyr_2643	0.73	-0.5
3,211,880	+		Psyr_2643	0.73	-1.4
3,211,881	-		Psyr_2643	0.74	-0.5
3,211,881	-		Psyr_2643	0.74	+0.1
3,211,881	-		Psyr_2643	0.74	+1.7
3,211,973	-		Psyr_2643	0.81	+0.8
3,212,014	+		Psyr_2643	0.84	-0.8
3,212,015	-		Psyr_2643	0.84	-0.8
3,212,148	+				-0.2
3,212,148	+				+0.3
3,212,148	+				+0.1
3,212,148	+				+0.2
3,212,149	-				-0.9
3,212,149	-				+0.1
3,212,149	-				-0.6
3,212,149	-				-0.4
3,212,149	-				-0.4
3,212,149	-				-2.2
3,212,374	+				+0.8
3,212,374	+				+0.5
3,212,374	+				+0.2
3,212,374	+				-0.6
3,212,374	+				-0.5
3,212,374	+				-3.3
3,212,375	-				+0.2
3,212,375	-				-1.1
3,212,375	-				+0.6
3,212,484	+				-0.6
3,212,485	-				-0.2
3,212,542	+				-0.2
3,212,543	-				-1.8
3,212,546	+				+0.0
3,212,595	+				+0.4
3,212,596	-				-0.1
3,212,596	-				-0.8
3,212,639	+				-2.0
3,212,639	+				-0.1
3,212,640	-				+0.1
3,212,640	-				-0.3
3,212,640	-				-1.8
3,212,640	-				-0.9
3,212,640	-				-1.4
3,212,643	+				-0.1
3,212,643	+				-2.5
3,212,643	+				-0.2
3,212,644	-				-0.8
3,212,714	+				-0.2
3,212,714	+				+0.4
3,212,769	+				-0.2
3,212,770	-				+1.2
3,212,770	-				-1.8
3,212,770	-				-0.1
3,212,770	-				-1.2
3,212,770	-				+0.4
3,212,791	+				-2.0
3,212,791	+				-1.2
3,212,791	+				-1.6
3,212,792	-				-0.5
3,212,792	-				-0.2
3,212,811	+				-1.2
3,212,812	-				-0.8
3,212,839	-				+1.5
3,212,839	-				-0.2
3,212,839	-				-2.0
3,212,839	-				-0.2
3,212,839	-				+0.0
3,212,839	-				+0.8
3,212,839	-				+2.8
3,212,839	-				-0.8
3,212,912	-				-2.7
3,212,918	-				-1.2
3,212,926	+		Psyr_2644	0.10	-0.3
3,212,987	-		Psyr_2644	0.13	-0.7
3,212,987	-		Psyr_2644	0.13	+1.1
3,212,989	+		Psyr_2644	0.13	-1.5
3,212,989	+		Psyr_2644	0.13	-0.8
3,212,990	-		Psyr_2644	0.14	+0.9
3,213,060	+		Psyr_2644	0.17	+0.8
3,213,060	+		Psyr_2644	0.17	-0.5
3,213,060	+		Psyr_2644	0.17	-0.4
3,213,061	-		Psyr_2644	0.17	-2.7
3,213,114	+		Psyr_2644	0.20	-1.1
3,213,115	-		Psyr_2644	0.20	-0.4
3,213,115	-		Psyr_2644	0.20	-1.2
3,213,115	-		Psyr_2644	0.20	-0.2
3,213,162	+		Psyr_2644	0.22	-0.3
3,213,162	+		Psyr_2644	0.22	+1.8
3,213,163	-		Psyr_2644	0.22	+0.8
3,213,163	-		Psyr_2644	0.22	-0.1
3,213,165	+		Psyr_2644	0.23	+0.4
3,213,195	-		Psyr_2644	0.24	-1.6
3,213,210	+		Psyr_2644	0.25	-0.2
3,213,223	+		Psyr_2644	0.26	-1.0
3,213,347	+		Psyr_2644	0.32	-1.1
3,213,347	+		Psyr_2644	0.32	-2.2
3,213,347	+		Psyr_2644	0.32	-0.6
3,213,348	-		Psyr_2644	0.32	-2.7
3,213,348	-		Psyr_2644	0.32	-0.2
3,213,348	-		Psyr_2644	0.32	-1.2
3,213,389	+		Psyr_2644	0.34	+0.5
3,213,437	+		Psyr_2644	0.37	+0.9
3,213,437	+		Psyr_2644	0.37	-0.4
3,213,438	-		Psyr_2644	0.37	-0.2
3,213,438	-		Psyr_2644	0.37	-2.7
3,213,444	+		Psyr_2644	0.37	-2.0
3,213,468	+		Psyr_2644	0.38	-1.0
3,213,523	+		Psyr_2644	0.41	-0.0
3,213,530	-		Psyr_2644	0.41	-1.1
3,213,541	-		Psyr_2644	0.42	-1.1
3,213,554	-		Psyr_2644	0.43	-0.2
3,213,586	+		Psyr_2644	0.44	-1.3
3,213,587	-		Psyr_2644	0.44	+1.8
3,213,587	-		Psyr_2644	0.44	+2.2
3,213,604	+		Psyr_2644	0.45	-0.0
3,213,605	-		Psyr_2644	0.45	-0.8
3,213,656	-		Psyr_2644	0.48	-0.0
3,213,843	+		Psyr_2644	0.58	-0.7
3,213,843	+		Psyr_2644	0.58	-1.3
3,213,843	+		Psyr_2644	0.58	-0.8
3,213,844	-		Psyr_2644	0.58	-0.5
3,213,844	-		Psyr_2644	0.58	-1.8
3,213,844	-		Psyr_2644	0.58	-0.8
3,213,844	-		Psyr_2644	0.58	-0.6
3,213,844	-		Psyr_2644	0.58	-0.4
3,214,016	+		Psyr_2644	0.67	-0.9
3,214,016	+		Psyr_2644	0.67	-0.2
3,214,016	+		Psyr_2644	0.67	-0.0
3,214,016	+		Psyr_2644	0.67	-1.4
3,214,017	-		Psyr_2644	0.67	+0.4
3,214,061	-		Psyr_2644	0.69	-0.8
3,214,100	-		Psyr_2644	0.71	-1.1
3,214,100	-		Psyr_2644	0.71	+0.8
3,214,117	+		Psyr_2644	0.72	-1.4
3,214,117	+		Psyr_2644	0.72	-0.6
3,214,117	+		Psyr_2644	0.72	-0.3
3,214,117	+		Psyr_2644	0.72	-0.5
3,214,117	+		Psyr_2644	0.72	-2.2
3,214,117	+		Psyr_2644	0.72	-1.7
3,214,118	-		Psyr_2644	0.72	-1.2
3,214,118	-		Psyr_2644	0.72	-2.5
3,214,118	-		Psyr_2644	0.72	+0.5
3,214,118	-		Psyr_2644	0.72	+0.6
3,214,118	-		Psyr_2644	0.72	-1.2
3,214,118	-		Psyr_2644	0.72	+0.3
3,214,118	-		Psyr_2644	0.72	-0.8
3,214,121	+		Psyr_2644	0.72	+0.3
3,214,121	+		Psyr_2644	0.72	-1.3
3,214,121	+		Psyr_2644	0.72	+0.0
3,214,121	+		Psyr_2644	0.72	-0.5
3,214,121	+		Psyr_2644	0.72	-1.1
3,214,121	+		Psyr_2644	0.72	+0.0
3,214,121	+		Psyr_2644	0.72	-1.2
3,214,121	+		Psyr_2644	0.72	+0.8
3,214,122	-		Psyr_2644	0.72	-0.8
3,214,122	-				-2.0
3,214,122	-		Psyr_2644	0.72	-0.2
3,214,122	-		Psyr_2644	0.72	-0.6
3,214,122	-		Psyr_2644	0.72	-2.7
3,214,122	-		Psyr_2644	0.72	-1.1
3,214,122	-		Psyr_2644	0.72	-3.4
3,214,188	+		Psyr_2644	0.76	-1.3
3,214,188	+		Psyr_2644	0.76	-1.9
3,214,189	-		Psyr_2644	0.76	-3.0
3,214,189	-		Psyr_2644	0.76	+0.0
3,214,189	-		Psyr_2644	0.76	+0.1
3,214,189	-		Psyr_2644	0.76	+0.6
3,214,189	-		Psyr_2644	0.76	-0.4
3,214,239	+		Psyr_2644	0.78	+0.4
3,214,240	-		Psyr_2644	0.78	-1.4
3,214,292	+		Psyr_2644	0.81	-2.5
3,214,309	+		Psyr_2644	0.82	+0.6
3,214,338	-		Psyr_2644	0.83	-0.6
3,214,338	-		Psyr_2644	0.83	-1.2
3,214,430	+		Psyr_2644	0.88	+0.8
3,214,430	+		Psyr_2644	0.88	-1.0
3,214,430	+		Psyr_2644	0.88	-0.2
3,214,430	+		Psyr_2644	0.88	-0.6
3,214,430	+		Psyr_2644	0.88	-0.6
3,214,430	+		Psyr_2644	0.88	+0.3
3,214,430	+		Psyr_2644	0.88	+0.9
3,214,431	-		Psyr_2644	0.88	-0.4
3,214,431	-		Psyr_2644	0.88	+0.2
3,214,431	-		Psyr_2644	0.88	-0.2
3,214,431	-		Psyr_2644	0.88	-0.0
3,214,443	+		Psyr_2644	0.89	+1.3
3,214,443	+		Psyr_2644	0.89	+0.9
3,214,474	-				-0.8
3,214,514	+				+0.2
3,214,514	+				-1.2
3,214,515	-				-1.8
3,214,516	+				-0.2
3,214,516	+				-0.4
3,214,516	+				+1.4
3,214,516	+				-0.3
3,214,516	+				-0.2
3,214,516	+				-1.1
3,214,516	+				+0.6
3,214,516	+				+0.4
3,214,516	+				-0.4
3,214,516	+				+1.4
3,214,516	+				-0.5
3,214,516	+				-0.4
3,214,516	+				+0.3
3,214,517	-				+0.4
3,214,517	-				+0.0
3,214,517	-				+0.3
3,214,517	-				-2.4
3,214,517	-				+0.6
3,214,517	-				-1.4
3,214,517	-				-0.8
3,214,520	+				-0.8
3,214,520	+				+0.3
3,214,520	+				+0.6
3,214,520	+				+0.3
3,214,520	+				+0.9
3,214,520	+				+0.5
3,214,520	+				+0.4
3,214,520	+				-0.2
3,214,520	+				+0.7
3,214,521	-				+2.0
3,214,521	-				-2.1
3,214,521	-				-2.1
3,214,521	-				+0.2
3,214,521	-				+0.2
3,214,521	-				+0.1
3,214,521	-				+0.3
3,214,524	+				+0.1
3,214,524	+				-0.2
3,214,593	+				+0.4
3,214,593	+				+0.5
3,214,593	+				+0.8
3,214,716	+				+1.0
3,214,729	-				-0.2
3,214,729	-				-0.4
3,214,735	+				-0.5
3,214,736	-				-0.7
3,214,736	-				+0.3
3,214,736	-				-1.5
3,214,736	-				-0.8
3,214,736	-				+1.4
3,214,764	-				-0.8
3,214,778	+				-0.7
3,214,778	+				-0.2
3,214,778	+				+0.8
3,214,778	+				-1.4
3,214,778	+				-0.8
3,214,779	-				-0.2
3,214,779	-				+0.1
3,214,779	-				-0.9
3,214,779	-				-0.8
3,214,779	-				+1.0
3,214,779	-				+1.3
3,214,779	-				-0.5
3,214,779	-				-0.8
3,214,779	-				-1.0
3,214,779	-				-0.2
3,214,779	-				-1.0
3,214,787	+				-0.4
3,214,788	-				+0.7
3,214,788	-				-1.5
3,214,788	-				-1.0
3,214,864	+				-1.4
3,214,864	+				-0.7
3,214,865	-				-2.2
3,214,953	+				-1.4
3,214,954	-				+0.6
3,214,988	+				+0.0
3,214,988	+				-2.1
3,214,988	+				-0.9
3,214,988	+				-1.8
3,214,989	-				-1.8
3,214,989	-				-0.5
3,215,001	-				-0.7
3,215,084	-				-0.1
3,215,084	-				-0.3
3,215,095	-				-2.5
3,215,095	-				+0.2
3,215,215	+		Psyr_2645	0.35	-0.7
3,215,240	-		Psyr_2645	0.42	-1.4
3,215,240	-		Psyr_2645	0.42	+1.2
3,215,240	-		Psyr_2645	0.42	+0.4
3,215,240	-		Psyr_2645	0.42	-0.1
3,215,240	-		Psyr_2645	0.42	+0.6
3,215,287	+		Psyr_2645	0.54	+0.1
3,215,287	+		Psyr_2645	0.54	-0.8
3,215,288	-		Psyr_2645	0.54	-0.9
3,215,288	-		Psyr_2645	0.54	+0.1
3,215,288	-		Psyr_2645	0.54	+2.7
3,215,288	-		Psyr_2645	0.54	+1.4
3,215,288	-		Psyr_2645	0.54	+0.5
3,215,288	-		Psyr_2645	0.54	+0.4
3,215,399	+		Psyr_2645	0.84	-1.5
3,215,399	+		Psyr_2645	0.84	-1.4
3,215,405	+		Psyr_2645	0.85	-1.1
3,215,405	+		Psyr_2645	0.85	-0.3
3,215,405	+		Psyr_2645	0.85	-0.2
3,215,405	+		Psyr_2645	0.85	-1.3
3,215,406	-		Psyr_2645	0.86	-1.0
3,215,646	+				+1.0
3,215,646	+				-0.8
3,215,646	+				-1.6
3,215,646	+				-0.1
3,215,646	+				+0.3
3,215,646	+				+0.4
3,215,646	+				-1.2
3,215,646	+				-1.0
3,215,646	+				-0.7
3,215,646	+				-0.2
3,215,646	+				-0.3
3,215,646	+				+0.4
3,215,646	+				+0.5
3,215,646	+				+0.5
3,215,647	-				-0.3
3,215,647	-				+0.5
3,215,647	-				-0.2
3,215,647	-				+0.2
3,215,647	-				+1.4