Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2560

Experiment: KB with Harmalol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2559 and Psyr_2560 overlap by 4 nucleotidesPsyr_2560 and Psyr_2561 are separated by 12 nucleotidesPsyr_2561 and Psyr_2562 overlap by 4 nucleotides Psyr_2559: Psyr_2559 - hypothetical protein, at 2,972,912 to 2,974,048 _2559 Psyr_2560: Psyr_2560 - hypothetical protein, at 2,974,045 to 2,975,091 _2560 Psyr_2561: Psyr_2561 - hypothetical protein, at 2,975,104 to 2,975,691 _2561 Psyr_2562: Psyr_2562 - hypothetical protein, at 2,975,688 to 2,977,271 _2562 Position (kb) 2974 2975 2976Strain fitness (log2 ratio) -2 -1 0 1 2at 2973.214 kb on + strand, within Psyr_2559at 2973.262 kb on - strand, within Psyr_2559at 2973.392 kb on + strand, within Psyr_2559at 2973.393 kb on - strand, within Psyr_2559at 2973.560 kb on + strand, within Psyr_2559at 2973.560 kb on + strand, within Psyr_2559at 2973.560 kb on + strand, within Psyr_2559at 2973.561 kb on - strand, within Psyr_2559at 2973.564 kb on + strand, within Psyr_2559at 2973.564 kb on + strand, within Psyr_2559at 2973.565 kb on - strand, within Psyr_2559at 2973.565 kb on - strand, within Psyr_2559at 2973.565 kb on - strand, within Psyr_2559at 2973.660 kb on + strand, within Psyr_2559at 2974.055 kb on - strandat 2974.144 kb on + strandat 2974.145 kb on - strandat 2974.270 kb on + strand, within Psyr_2560at 2974.284 kb on + strand, within Psyr_2560at 2974.597 kb on + strand, within Psyr_2560at 2974.598 kb on - strand, within Psyr_2560at 2974.598 kb on - strand, within Psyr_2560at 2974.598 kb on - strand, within Psyr_2560at 2974.598 kb on - strand, within Psyr_2560at 2974.598 kb on - strand, within Psyr_2560at 2974.691 kb on + strand, within Psyr_2560at 2974.692 kb on - strand, within Psyr_2560at 2974.692 kb on - strand, within Psyr_2560at 2974.692 kb on - strand, within Psyr_2560at 2974.692 kb on - strand, within Psyr_2560at 2974.695 kb on + strand, within Psyr_2560at 2974.695 kb on + strand, within Psyr_2560at 2974.696 kb on - strand, within Psyr_2560at 2974.696 kb on - strand, within Psyr_2560at 2974.696 kb on - strand, within Psyr_2560at 2975.103 kb on + strandat 2975.104 kb on - strandat 2975.163 kb on + strand, within Psyr_2561at 2975.188 kb on + strand, within Psyr_2561at 2975.264 kb on - strand, within Psyr_2561at 2975.264 kb on - strand, within Psyr_2561at 2975.590 kb on + strand, within Psyr_2561at 2975.591 kb on - strand, within Psyr_2561at 2975.591 kb on - strand, within Psyr_2561at 2975.591 kb on - strand, within Psyr_2561at 2975.591 kb on - strand, within Psyr_2561at 2975.594 kb on + strand, within Psyr_2561at 2975.595 kb on - strand, within Psyr_2561at 2975.973 kb on - strand, within Psyr_2562

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM
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2,973,214 + Psyr_2559 0.27 +0.2
2,973,262 - Psyr_2559 0.31 -0.6
2,973,392 + Psyr_2559 0.42 +1.1
2,973,393 - Psyr_2559 0.42 +0.8
2,973,560 + Psyr_2559 0.57 +0.2
2,973,560 + Psyr_2559 0.57 -0.8
2,973,560 + Psyr_2559 0.57 +0.7
2,973,561 - Psyr_2559 0.57 +0.8
2,973,564 + Psyr_2559 0.57 -2.1
2,973,564 + Psyr_2559 0.57 +1.6
2,973,565 - Psyr_2559 0.57 +0.8
2,973,565 - Psyr_2559 0.57 +0.8
2,973,565 - Psyr_2559 0.57 -1.0
2,973,660 + Psyr_2559 0.66 -0.6
2,974,055 - -1.0
2,974,144 + +0.9
2,974,145 - +1.5
2,974,270 + Psyr_2560 0.21 -0.8
2,974,284 + Psyr_2560 0.23 -0.5
2,974,597 + Psyr_2560 0.53 -0.7
2,974,598 - Psyr_2560 0.53 +2.4
2,974,598 - Psyr_2560 0.53 +0.4
2,974,598 - Psyr_2560 0.53 +0.2
2,974,598 - Psyr_2560 0.53 +0.5
2,974,598 - Psyr_2560 0.53 +1.0
2,974,691 + Psyr_2560 0.62 +0.8
2,974,692 - Psyr_2560 0.62 +0.2
2,974,692 - Psyr_2560 0.62 -1.5
2,974,692 - Psyr_2560 0.62 +0.5
2,974,692 - Psyr_2560 0.62 +0.9
2,974,695 + Psyr_2560 0.62 +0.3
2,974,695 + Psyr_2560 0.62 -0.2
2,974,696 - Psyr_2560 0.62 +0.9
2,974,696 - Psyr_2560 0.62 +0.5
2,974,696 - Psyr_2560 0.62 -0.6
2,975,103 + +0.4
2,975,104 - +0.8
2,975,163 + Psyr_2561 0.10 +0.3
2,975,188 + Psyr_2561 0.14 -1.8
2,975,264 - Psyr_2561 0.27 -1.0
2,975,264 - Psyr_2561 0.27 -1.5
2,975,590 + Psyr_2561 0.83 -0.0
2,975,591 - Psyr_2561 0.83 +0.1
2,975,591 - Psyr_2561 0.83 -1.7
2,975,591 - Psyr_2561 0.83 -0.2
2,975,591 - Psyr_2561 0.83 -0.2
2,975,594 + Psyr_2561 0.83 +0.6
2,975,595 - Psyr_2561 0.84 +0.1
2,975,973 - Psyr_2562 0.18 +0.8

Or see this region's nucleotide sequence