Experiment: KB with Harmalol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1466 and Psyr_1467 are separated by 88 nucleotides Psyr_1467 and Psyr_1468 are separated by 95 nucleotides Psyr_1468 and Psyr_1469 are separated by 61 nucleotides Psyr_1469 and Psyr_1470 are separated by 296 nucleotides
Psyr_1466: Psyr_1466 - hypothetical protein, at 1,654,340 to 1,654,864
_1466
Psyr_1467: Psyr_1467 - conserved hypothetical protein, at 1,654,953 to 1,655,564
_1467
Psyr_1468: Psyr_1468 - hypothetical protein, at 1,655,660 to 1,656,022
_1468
Psyr_1469: Psyr_1469 - hypothetical protein, at 1,656,084 to 1,656,401
_1469
Psyr_1470: Psyr_1470 - hypothetical protein, at 1,656,698 to 1,657,270
_1470
Position (kb) 1655
1656
1657 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1654.660 kb on - strand, within Psyr_1466 at 1654.685 kb on + strand, within Psyr_1466 at 1654.685 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.736 kb on + strand, within Psyr_1466 at 1654.737 kb on - strand, within Psyr_1466 at 1654.737 kb on - strand, within Psyr_1466 at 1654.843 kb on + strand at 1654.843 kb on + strand at 1654.844 kb on - strand at 1654.844 kb on - strand at 1654.847 kb on + strand at 1654.881 kb on + strand at 1654.882 kb on - strand at 1654.884 kb on + strand at 1654.884 kb on + strand at 1654.885 kb on - strand at 1654.885 kb on - strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.921 kb on + strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.922 kb on - strand at 1654.928 kb on - strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1654.957 kb on + strand at 1655.049 kb on + strand, within Psyr_1467 at 1655.049 kb on + strand, within Psyr_1467 at 1655.049 kb on + strand, within Psyr_1467 at 1655.050 kb on - strand, within Psyr_1467 at 1655.383 kb on + strand, within Psyr_1467 at 1655.384 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.387 kb on - strand, within Psyr_1467 at 1655.441 kb on - strand, within Psyr_1467 at 1655.545 kb on + strand at 1655.568 kb on + strand at 1655.568 kb on + strand at 1655.569 kb on - strand at 1655.569 kb on - strand at 1655.593 kb on + strand at 1655.593 kb on + strand at 1655.597 kb on - strand at 1655.652 kb on + strand at 1655.671 kb on - strand at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.698 kb on + strand, within Psyr_1468 at 1655.699 kb on - strand, within Psyr_1468 at 1655.699 kb on - strand, within Psyr_1468 at 1655.707 kb on - strand, within Psyr_1468 at 1655.720 kb on + strand, within Psyr_1468 at 1655.720 kb on + strand, within Psyr_1468 at 1655.720 kb on + strand, within Psyr_1468 at 1655.721 kb on - strand, within Psyr_1468 at 1655.745 kb on - strand, within Psyr_1468 at 1655.793 kb on + strand, within Psyr_1468 at 1655.793 kb on + strand, within Psyr_1468 at 1655.794 kb on - strand, within Psyr_1468 at 1655.807 kb on + strand, within Psyr_1468 at 1655.808 kb on - strand, within Psyr_1468 at 1655.891 kb on - strand, within Psyr_1468 at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.995 kb on + strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.996 kb on - strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.998 kb on + strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1655.999 kb on - strand at 1656.121 kb on + strand, within Psyr_1469 at 1656.122 kb on - strand, within Psyr_1469 at 1656.122 kb on - strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.123 kb on + strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.124 kb on - strand, within Psyr_1469 at 1656.125 kb on + strand at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.125 kb on + strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.126 kb on - strand, within Psyr_1469 at 1656.158 kb on - strand, within Psyr_1469 at 1656.187 kb on + strand, within Psyr_1469 at 1656.187 kb on + strand, within Psyr_1469 at 1656.187 kb on + strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.188 kb on - strand, within Psyr_1469 at 1656.269 kb on - strand, within Psyr_1469 at 1656.320 kb on - strand, within Psyr_1469 at 1656.320 kb on - strand, within Psyr_1469 at 1656.320 kb on - strand, within Psyr_1469 at 1656.323 kb on + strand, within Psyr_1469 at 1656.323 kb on + strand, within Psyr_1469 at 1656.326 kb on + strand, within Psyr_1469 at 1656.378 kb on + strand at 1656.379 kb on - strand at 1656.383 kb on + strand at 1656.383 kb on + strand at 1656.386 kb on + strand at 1656.389 kb on + strand at 1656.390 kb on - strand at 1656.414 kb on - strand at 1656.415 kb on + strand at 1656.416 kb on - strand at 1656.416 kb on - strand at 1656.459 kb on - strand at 1656.467 kb on + strand at 1656.468 kb on - strand at 1656.468 kb on - strand at 1656.490 kb on - strand at 1656.490 kb on - strand at 1656.544 kb on + strand at 1656.597 kb on + strand at 1656.640 kb on + strand at 1656.641 kb on - strand at 1656.687 kb on + strand at 1656.697 kb on - strand at 1656.754 kb on + strand at 1656.763 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.894 kb on + strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.895 kb on - strand, within Psyr_1470 at 1656.924 kb on + strand, within Psyr_1470 at 1656.924 kb on + strand, within Psyr_1470 at 1656.925 kb on - strand, within Psyr_1470 at 1656.967 kb on + strand, within Psyr_1470 at 1656.967 kb on + strand, within Psyr_1470 at 1656.968 kb on - strand, within Psyr_1470 at 1656.981 kb on + strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.982 kb on - strand, within Psyr_1470 at 1656.986 kb on - strand, within Psyr_1470
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM remove 1,654,660 - Psyr_1466 0.61 +0.4 1,654,685 + Psyr_1466 0.66 +0.2 1,654,685 + Psyr_1466 0.66 +0.5 1,654,736 + Psyr_1466 0.75 +0.1 1,654,736 + Psyr_1466 0.75 -0.2 1,654,736 + Psyr_1466 0.75 +0.4 1,654,736 + Psyr_1466 0.75 +0.2 1,654,736 + Psyr_1466 0.75 -0.4 1,654,737 - Psyr_1466 0.76 +0.0 1,654,737 - Psyr_1466 0.76 -1.8 1,654,843 + -0.2 1,654,843 + +0.8 1,654,844 - -0.5 1,654,844 - +0.1 1,654,847 + -0.8 1,654,881 + +0.5 1,654,882 - +0.8 1,654,884 + +1.6 1,654,884 + +0.4 1,654,885 - -0.9 1,654,885 - +1.8 1,654,921 + -0.6 1,654,921 + +0.5 1,654,921 + -2.2 1,654,921 + -1.3 1,654,921 + +0.2 1,654,922 - +0.1 1,654,922 - -0.1 1,654,922 - -1.3 1,654,922 - -0.3 1,654,922 - +0.4 1,654,922 - -0.0 1,654,928 - -0.4 1,654,957 + +0.3 1,654,957 + +1.1 1,654,957 + +0.2 1,654,957 + +0.3 1,655,049 + Psyr_1467 0.16 -0.2 1,655,049 + Psyr_1467 0.16 -1.2 1,655,049 + Psyr_1467 0.16 -1.2 1,655,050 - Psyr_1467 0.16 -3.0 1,655,383 + Psyr_1467 0.70 +1.0 1,655,384 - Psyr_1467 0.70 -1.6 1,655,387 - Psyr_1467 0.71 +0.8 1,655,387 - Psyr_1467 0.71 -1.1 1,655,387 - Psyr_1467 0.71 +0.8 1,655,387 - Psyr_1467 0.71 +0.1 1,655,441 - Psyr_1467 0.80 -0.2 1,655,545 + -0.1 1,655,568 + +0.6 1,655,568 + -0.2 1,655,569 - -0.3 1,655,569 - +0.8 1,655,593 + +0.3 1,655,593 + -0.9 1,655,597 - -0.8 1,655,652 + +0.5 1,655,671 - +0.8 1,655,698 + Psyr_1468 0.10 -0.6 1,655,698 + Psyr_1468 0.10 -1.2 1,655,698 + Psyr_1468 0.10 -0.1 1,655,698 + Psyr_1468 0.10 +1.2 1,655,698 + Psyr_1468 0.10 -0.7 1,655,699 - Psyr_1468 0.11 +0.8 1,655,699 - Psyr_1468 0.11 +1.6 1,655,707 - Psyr_1468 0.13 +0.4 1,655,720 + Psyr_1468 0.17 +1.8 1,655,720 + Psyr_1468 0.17 +0.9 1,655,720 + Psyr_1468 0.17 +0.9 1,655,721 - Psyr_1468 0.17 +0.1 1,655,745 - Psyr_1468 0.23 -0.5 1,655,793 + Psyr_1468 0.37 +0.8 1,655,793 + Psyr_1468 0.37 +0.6 1,655,794 - Psyr_1468 0.37 -0.2 1,655,807 + Psyr_1468 0.40 -1.6 1,655,808 - Psyr_1468 0.41 +3.6 1,655,891 - Psyr_1468 0.64 -0.1 1,655,995 + -0.9 1,655,995 + -0.7 1,655,995 + +0.4 1,655,995 + +1.4 1,655,995 + -0.8 1,655,995 + +0.3 1,655,995 + -1.6 1,655,995 + -0.4 1,655,996 - -0.8 1,655,996 - -1.8 1,655,996 - +1.1 1,655,996 - +1.2 1,655,996 - +0.4 1,655,996 - -0.8 1,655,996 - -0.5 1,655,996 - -0.8 1,655,996 - -0.1 1,655,998 + +0.4 1,655,998 + -0.1 1,655,998 + -1.2 1,655,998 + +1.4 1,655,998 + +0.3 1,655,998 + -1.0 1,655,998 + -0.3 1,655,998 + -1.2 1,655,999 - -0.5 1,655,999 - +0.2 1,655,999 - +0.4 1,655,999 - +2.4 1,655,999 - +0.9 1,655,999 - -2.3 1,655,999 - -1.0 1,655,999 - -1.3 1,655,999 - +0.9 1,656,121 + Psyr_1469 0.12 -1.2 1,656,122 - Psyr_1469 0.12 +0.2 1,656,122 - Psyr_1469 0.12 +1.5 1,656,123 + Psyr_1469 0.12 -0.2 1,656,123 + Psyr_1469 0.12 -0.6 1,656,123 + Psyr_1469 0.12 -0.1 1,656,123 + Psyr_1469 0.12 -2.8 1,656,123 + Psyr_1469 0.12 -0.8 1,656,123 + Psyr_1469 0.12 -1.6 1,656,123 + Psyr_1469 0.12 -0.2 1,656,123 + Psyr_1469 0.12 +0.1 1,656,123 + Psyr_1469 0.12 -0.9 1,656,123 + Psyr_1469 0.12 -1.2 1,656,123 + Psyr_1469 0.12 +1.4 1,656,123 + Psyr_1469 0.12 +1.2 1,656,123 + Psyr_1469 0.12 +0.4 1,656,123 + Psyr_1469 0.12 -3.2 1,656,123 + Psyr_1469 0.12 -0.6 1,656,124 - Psyr_1469 0.13 -1.5 1,656,124 - Psyr_1469 0.13 -0.7 1,656,124 - Psyr_1469 0.13 -0.0 1,656,124 - Psyr_1469 0.13 +1.0 1,656,124 - Psyr_1469 0.13 +0.1 1,656,124 - Psyr_1469 0.13 +0.1 1,656,124 - Psyr_1469 0.13 -3.9 1,656,124 - Psyr_1469 0.13 +0.5 1,656,124 - Psyr_1469 0.13 -0.8 1,656,124 - Psyr_1469 0.13 -0.5 1,656,124 - Psyr_1469 0.13 -2.9 1,656,124 - Psyr_1469 0.13 +0.2 1,656,124 - Psyr_1469 0.13 +0.5 1,656,124 - -2.0 1,656,124 - Psyr_1469 0.13 +0.8 1,656,124 - Psyr_1469 0.13 -0.1 1,656,124 - Psyr_1469 0.13 +0.7 1,656,124 - Psyr_1469 0.13 -0.8 1,656,124 - Psyr_1469 0.13 -1.7 1,656,124 - Psyr_1469 0.13 +0.2 1,656,124 - Psyr_1469 0.13 +1.3 1,656,124 - Psyr_1469 0.13 -0.0 1,656,124 - Psyr_1469 0.13 -0.7 1,656,124 - Psyr_1469 0.13 +0.7 1,656,124 - Psyr_1469 0.13 +1.3 1,656,124 - Psyr_1469 0.13 +0.5 1,656,124 - Psyr_1469 0.13 -0.0 1,656,125 + +0.4 1,656,125 + Psyr_1469 0.13 -1.8 1,656,125 + Psyr_1469 0.13 -2.9 1,656,125 + Psyr_1469 0.13 -0.2 1,656,125 + Psyr_1469 0.13 -0.4 1,656,125 + Psyr_1469 0.13 -1.2 1,656,125 + Psyr_1469 0.13 -0.5 1,656,125 + Psyr_1469 0.13 -1.6 1,656,125 + Psyr_1469 0.13 -0.1 1,656,126 - Psyr_1469 0.13 -1.6 1,656,126 - Psyr_1469 0.13 -0.9 1,656,126 - Psyr_1469 0.13 +0.5 1,656,126 - Psyr_1469 0.13 -0.2 1,656,126 - Psyr_1469 0.13 -0.5 1,656,126 - Psyr_1469 0.13 +0.3 1,656,126 - Psyr_1469 0.13 -0.1 1,656,126 - Psyr_1469 0.13 -1.1 1,656,126 - Psyr_1469 0.13 +1.3 1,656,126 - Psyr_1469 0.13 +0.4 1,656,126 - Psyr_1469 0.13 -0.8 1,656,158 - Psyr_1469 0.23 +0.4 1,656,187 + Psyr_1469 0.32 +0.4 1,656,187 + Psyr_1469 0.32 -0.1 1,656,187 + Psyr_1469 0.32 -1.2 1,656,188 - Psyr_1469 0.33 +0.1 1,656,188 - Psyr_1469 0.33 +0.0 1,656,188 - Psyr_1469 0.33 +0.6 1,656,188 - Psyr_1469 0.33 -0.0 1,656,188 - Psyr_1469 0.33 +0.8 1,656,188 - Psyr_1469 0.33 +0.3 1,656,269 - Psyr_1469 0.58 +0.3 1,656,320 - Psyr_1469 0.74 -1.6 1,656,320 - Psyr_1469 0.74 -2.4 1,656,320 - Psyr_1469 0.74 +0.1 1,656,323 + Psyr_1469 0.75 +0.0 1,656,323 + Psyr_1469 0.75 -0.6 1,656,326 + Psyr_1469 0.76 +0.4 1,656,378 + +0.8 1,656,379 - -0.5 1,656,383 + +1.1 1,656,383 + -1.4 1,656,386 + +0.0 1,656,389 + +0.2 1,656,390 - +0.3 1,656,414 - +0.0 1,656,415 + -0.2 1,656,416 - +0.0 1,656,416 - -0.0 1,656,459 - -1.0 1,656,467 + +0.1 1,656,468 - -0.7 1,656,468 - -0.3 1,656,490 - -0.6 1,656,490 - -1.6 1,656,544 + +0.6 1,656,597 + +0.4 1,656,640 + +0.2 1,656,641 - -0.1 1,656,687 + +0.3 1,656,697 - +0.3 1,656,754 + -1.0 1,656,763 + Psyr_1470 0.11 +0.0 1,656,894 + Psyr_1470 0.34 -0.1 1,656,894 + Psyr_1470 0.34 +0.2 1,656,894 + Psyr_1470 0.34 -2.6 1,656,894 + Psyr_1470 0.34 -0.9 1,656,894 + Psyr_1470 0.34 +0.6 1,656,894 + Psyr_1470 0.34 +1.7 1,656,894 + Psyr_1470 0.34 -0.7 1,656,895 - Psyr_1470 0.34 +0.9 1,656,895 - Psyr_1470 0.34 +1.1 1,656,895 - Psyr_1470 0.34 -0.2 1,656,895 - Psyr_1470 0.34 +0.4 1,656,895 - Psyr_1470 0.34 -0.5 1,656,895 - Psyr_1470 0.34 -0.2 1,656,895 - Psyr_1470 0.34 +0.4 1,656,924 + Psyr_1470 0.39 -1.0 1,656,924 + Psyr_1470 0.39 -1.6 1,656,925 - Psyr_1470 0.40 +0.1 1,656,967 + Psyr_1470 0.47 +0.5 1,656,967 + Psyr_1470 0.47 +1.3 1,656,968 - Psyr_1470 0.47 -0.6 1,656,981 + Psyr_1470 0.49 -0.1 1,656,982 - Psyr_1470 0.50 +0.5 1,656,982 - Psyr_1470 0.50 -0.3 1,656,982 - Psyr_1470 0.50 -1.2 1,656,982 - Psyr_1470 0.50 -0.7 1,656,982 - Psyr_1470 0.50 +0.0 1,656,982 - Psyr_1470 0.50 -0.9 1,656,982 - Psyr_1470 0.50 +0.7 1,656,982 - Psyr_1470 0.50 +0.3 1,656,986 - Psyr_1470 0.50 -0.0
Or see this region's nucleotide sequence