Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1294

Experiment: KB with Harmalol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1293 and Psyr_1294 overlap by 28 nucleotidesPsyr_1294 and Psyr_1295 are separated by 289 nucleotidesPsyr_1295 and Psyr_1296 are separated by 171 nucleotides Psyr_1293: Psyr_1293 - EAL:Response regulator receiver, at 1,461,470 to 1,462,831 _1293 Psyr_1294: Psyr_1294 - regulatory protein, LuxR:Response regulator receiver, at 1,462,804 to 1,463,466 _1294 Psyr_1295: Psyr_1295 - conserved domain protein, at 1,463,756 to 1,464,052 _1295 Psyr_1296: Psyr_1296 - conserved hypothetical protein, at 1,464,224 to 1,465,102 _1296 Position (kb) 1462 1463 1464Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1461.872 kb on + strand, within Psyr_1293at 1461.872 kb on + strand, within Psyr_1293at 1461.872 kb on + strand, within Psyr_1293at 1461.906 kb on - strand, within Psyr_1293at 1461.906 kb on - strand, within Psyr_1293at 1461.906 kb on - strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.946 kb on + strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.947 kb on - strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.948 kb on + strand, within Psyr_1293at 1461.949 kb on - strand, within Psyr_1293at 1461.949 kb on - strand, within Psyr_1293at 1461.949 kb on - strand, within Psyr_1293at 1462.026 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.061 kb on + strand, within Psyr_1293at 1462.137 kb on - strand, within Psyr_1293at 1462.137 kb on - strand, within Psyr_1293at 1462.515 kb on + strand, within Psyr_1293at 1462.515 kb on + strand, within Psyr_1293at 1462.765 kb on + strandat 1462.766 kb on - strandat 1462.829 kb on + strandat 1462.829 kb on + strandat 1462.829 kb on + strandat 1462.829 kb on + strandat 1462.830 kb on - strandat 1462.830 kb on - strandat 1462.830 kb on - strandat 1462.963 kb on + strand, within Psyr_1294at 1462.964 kb on - strand, within Psyr_1294at 1463.083 kb on + strand, within Psyr_1294at 1463.321 kb on - strand, within Psyr_1294at 1463.386 kb on + strand, within Psyr_1294at 1463.387 kb on - strand, within Psyr_1294at 1463.489 kb on + strandat 1463.490 kb on - strandat 1463.498 kb on - strandat 1463.539 kb on + strandat 1463.539 kb on + strandat 1463.540 kb on - strandat 1463.550 kb on + strandat 1463.550 kb on + strandat 1463.551 kb on - strandat 1463.551 kb on - strandat 1463.568 kb on + strandat 1463.568 kb on + strandat 1463.568 kb on + strandat 1463.568 kb on + strandat 1463.569 kb on - strandat 1463.569 kb on - strandat 1463.569 kb on - strandat 1463.569 kb on - strandat 1463.682 kb on - strandat 1463.764 kb on + strandat 1463.765 kb on - strandat 1463.772 kb on + strandat 1463.778 kb on + strandat 1463.857 kb on + strand, within Psyr_1295at 1464.097 kb on + strandat 1464.097 kb on + strandat 1464.097 kb on + strandat 1464.097 kb on + strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.098 kb on - strandat 1464.115 kb on - strandat 1464.115 kb on - strandat 1464.158 kb on + strandat 1464.159 kb on - strandat 1464.261 kb on + strandat 1464.261 kb on + strandat 1464.262 kb on - strandat 1464.297 kb on + strandat 1464.297 kb on + strandat 1464.298 kb on - strandat 1464.298 kb on - strandat 1464.393 kb on + strand, within Psyr_1296at 1464.394 kb on - strand, within Psyr_1296at 1464.394 kb on - strand, within Psyr_1296at 1464.406 kb on - strand, within Psyr_1296

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Harmalol 10 mM
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1,461,872 + Psyr_1293 0.30 -0.5
1,461,872 + Psyr_1293 0.30 +0.5
1,461,872 + Psyr_1293 0.30 -1.4
1,461,906 - Psyr_1293 0.32 +0.0
1,461,906 - Psyr_1293 0.32 +0.2
1,461,906 - Psyr_1293 0.32 -0.2
1,461,946 + Psyr_1293 0.35 -1.1
1,461,946 + Psyr_1293 0.35 -0.3
1,461,946 + Psyr_1293 0.35 -1.6
1,461,946 + Psyr_1293 0.35 +1.2
1,461,946 + Psyr_1293 0.35 +2.3
1,461,946 + Psyr_1293 0.35 +0.3
1,461,946 + Psyr_1293 0.35 +0.4
1,461,947 - Psyr_1293 0.35 -1.4
1,461,947 - Psyr_1293 0.35 -0.8
1,461,947 - Psyr_1293 0.35 +0.5
1,461,947 - Psyr_1293 0.35 -0.5
1,461,947 - Psyr_1293 0.35 +1.3
1,461,947 - Psyr_1293 0.35 -1.0
1,461,947 - Psyr_1293 0.35 -0.1
1,461,947 - Psyr_1293 0.35 -1.0
1,461,947 - Psyr_1293 0.35 -0.5
1,461,948 + Psyr_1293 0.35 -0.2
1,461,948 + Psyr_1293 0.35 -0.8
1,461,948 + Psyr_1293 0.35 -0.2
1,461,948 + Psyr_1293 0.35 +0.5
1,461,949 - Psyr_1293 0.35 -0.3
1,461,949 - Psyr_1293 0.35 +0.3
1,461,949 - Psyr_1293 0.35 -0.7
1,462,026 + Psyr_1293 0.41 +0.3
1,462,061 + Psyr_1293 0.43 +0.6
1,462,061 + Psyr_1293 0.43 +0.2
1,462,061 + Psyr_1293 0.43 -0.2
1,462,061 + Psyr_1293 0.43 +0.4
1,462,061 + Psyr_1293 0.43 -0.7
1,462,137 - Psyr_1293 0.49 -1.3
1,462,137 - Psyr_1293 0.49 -2.9
1,462,515 + Psyr_1293 0.77 +0.4
1,462,515 + Psyr_1293 0.77 -0.2
1,462,765 + -0.3
1,462,766 - +0.2
1,462,829 + -0.3
1,462,829 + +0.3
1,462,829 + -1.1
1,462,829 + +0.1
1,462,830 - +0.8
1,462,830 - +0.0
1,462,830 - +1.8
1,462,963 + Psyr_1294 0.24 +0.7
1,462,964 - Psyr_1294 0.24 +0.8
1,463,083 + Psyr_1294 0.42 +1.6
1,463,321 - Psyr_1294 0.78 +0.9
1,463,386 + Psyr_1294 0.88 -1.0
1,463,387 - Psyr_1294 0.88 +0.6
1,463,489 + -0.5
1,463,490 - +2.0
1,463,498 - -1.1
1,463,539 + +0.2
1,463,539 + -1.2
1,463,540 - -0.1
1,463,550 + +0.7
1,463,550 + +0.8
1,463,551 - +1.6
1,463,551 - -0.0
1,463,568 + +0.4
1,463,568 + -2.0
1,463,568 + +0.4
1,463,568 + -0.6
1,463,569 - +0.8
1,463,569 - +0.4
1,463,569 - -0.0
1,463,569 - -0.2
1,463,682 - -2.9
1,463,764 + -0.8
1,463,765 - -0.7
1,463,772 + -1.3
1,463,778 + -0.0
1,463,857 + Psyr_1295 0.34 +0.1
1,464,097 + -0.2
1,464,097 + -1.1
1,464,097 + -0.8
1,464,097 + -0.4
1,464,098 - +0.2
1,464,098 - -0.5
1,464,098 - -1.0
1,464,098 - -2.2
1,464,098 - +1.6
1,464,098 - +0.1
1,464,098 - +1.5
1,464,098 - -0.5
1,464,098 - +0.3
1,464,115 - +0.8
1,464,115 - +0.3
1,464,158 + -0.2
1,464,159 - -0.9
1,464,261 + -1.1
1,464,261 + -0.8
1,464,262 - -1.4
1,464,297 + -2.2
1,464,297 + +0.3
1,464,298 - +0.0
1,464,298 - -0.2
1,464,393 + Psyr_1296 0.19 +1.3
1,464,394 - Psyr_1296 0.19 -0.5
1,464,394 - Psyr_1296 0.19 -0.2
1,464,406 - Psyr_1296 0.21 +1.3

Or see this region's nucleotide sequence