Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26940 and BWI76_RS26945 are separated by 108 nucleotides BWI76_RS26945 and BWI76_RS26950 are separated by 3 nucleotides BWI76_RS26950 and BWI76_RS26955 are separated by 101 nucleotides
BWI76_RS26940: BWI76_RS26940 - transcriptional regulator, at 5,588,562 to 5,589,578
_RS26940
BWI76_RS26945: BWI76_RS26945 - hypothetical protein, at 5,589,687 to 5,590,436
_RS26945
BWI76_RS26950: BWI76_RS26950 - 2-dehydro-3-deoxygluconokinase, at 5,590,440 to 5,591,378
_RS26950
BWI76_RS26955: BWI76_RS26955 - MFS transporter, at 5,591,480 to 5,592,760
_RS26955
Position (kb) 5590
5591
5592 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5589.442 kb on + strand, within BWI76_RS26940 at 5589.450 kb on - strand, within BWI76_RS26940 at 5589.611 kb on + strand at 5589.687 kb on - strand at 5589.757 kb on + strand at 5589.821 kb on - strand, within BWI76_RS26945 at 5589.978 kb on - strand, within BWI76_RS26945 at 5590.209 kb on - strand, within BWI76_RS26945 at 5590.250 kb on + strand, within BWI76_RS26945 at 5590.263 kb on + strand, within BWI76_RS26945 at 5590.403 kb on - strand at 5590.562 kb on - strand, within BWI76_RS26950 at 5590.577 kb on + strand, within BWI76_RS26950 at 5590.588 kb on + strand, within BWI76_RS26950 at 5590.627 kb on + strand, within BWI76_RS26950 at 5590.676 kb on - strand, within BWI76_RS26950 at 5590.876 kb on - strand, within BWI76_RS26950 at 5591.035 kb on + strand, within BWI76_RS26950 at 5591.043 kb on - strand, within BWI76_RS26950 at 5591.346 kb on + strand at 5591.386 kb on - strand at 5591.546 kb on + strand at 5591.580 kb on - strand at 5591.624 kb on - strand, within BWI76_RS26955 at 5591.658 kb on - strand, within BWI76_RS26955 at 5591.720 kb on - strand, within BWI76_RS26955 at 5591.774 kb on + strand, within BWI76_RS26955 at 5591.811 kb on + strand, within BWI76_RS26955 at 5591.813 kb on - strand, within BWI76_RS26955 at 5591.893 kb on + strand, within BWI76_RS26955 at 5591.901 kb on - strand, within BWI76_RS26955 at 5591.940 kb on - strand, within BWI76_RS26955 at 5592.016 kb on + strand, within BWI76_RS26955 at 5592.033 kb on + strand, within BWI76_RS26955 at 5592.152 kb on + strand, within BWI76_RS26955 at 5592.182 kb on - strand, within BWI76_RS26955 at 5592.218 kb on - strand, within BWI76_RS26955 at 5592.226 kb on - strand, within BWI76_RS26955 at 5592.303 kb on - strand, within BWI76_RS26955 at 5592.351 kb on - strand, within BWI76_RS26955
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,589,442 + BWI76_RS26940 0.87 +0.1 5,589,450 - BWI76_RS26940 0.87 +0.8 5,589,611 + -1.4 5,589,687 - -0.3 5,589,757 + +4.0 5,589,821 - BWI76_RS26945 0.18 -1.0 5,589,978 - BWI76_RS26945 0.39 +1.0 5,590,209 - BWI76_RS26945 0.70 -0.0 5,590,250 + BWI76_RS26945 0.75 +0.5 5,590,263 + BWI76_RS26945 0.77 -0.6 5,590,403 - -0.4 5,590,562 - BWI76_RS26950 0.13 -0.3 5,590,577 + BWI76_RS26950 0.15 +0.4 5,590,588 + BWI76_RS26950 0.16 +0.7 5,590,627 + BWI76_RS26950 0.20 -0.2 5,590,676 - BWI76_RS26950 0.25 -0.6 5,590,876 - BWI76_RS26950 0.46 +1.3 5,591,035 + BWI76_RS26950 0.63 +0.0 5,591,043 - BWI76_RS26950 0.64 +0.7 5,591,346 + +0.8 5,591,386 - +0.2 5,591,546 + +0.0 5,591,580 - +1.3 5,591,624 - BWI76_RS26955 0.11 +0.8 5,591,658 - BWI76_RS26955 0.14 -0.5 5,591,720 - BWI76_RS26955 0.19 +1.2 5,591,774 + BWI76_RS26955 0.23 -0.5 5,591,811 + BWI76_RS26955 0.26 -1.3 5,591,813 - BWI76_RS26955 0.26 -0.2 5,591,893 + BWI76_RS26955 0.32 +0.0 5,591,901 - BWI76_RS26955 0.33 +1.2 5,591,940 - BWI76_RS26955 0.36 +0.4 5,592,016 + BWI76_RS26955 0.42 -0.4 5,592,033 + BWI76_RS26955 0.43 +2.1 5,592,152 + BWI76_RS26955 0.52 +0.0 5,592,182 - BWI76_RS26955 0.55 +1.0 5,592,218 - BWI76_RS26955 0.58 +0.1 5,592,226 - BWI76_RS26955 0.58 +1.4 5,592,303 - BWI76_RS26955 0.64 -0.1 5,592,351 - BWI76_RS26955 0.68 -1.3
Or see this region's nucleotide sequence