Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17865 and BWI76_RS17870 are separated by 3 nucleotides BWI76_RS17870 and BWI76_RS17875 are separated by 162 nucleotides
BWI76_RS17865: BWI76_RS17865 - aminodeoxychorismate synthase subunit I, at 3,714,375 to 3,715,730
_RS17865
BWI76_RS17870: BWI76_RS17870 - coenzyme A pyrophosphatase, at 3,715,734 to 3,716,312
_RS17870
BWI76_RS17875: BWI76_RS17875 - L-serine ammonia-lyase, at 3,716,475 to 3,717,839
_RS17875
Position (kb)
3715
3716
3717 Strain fitness (log2 ratio)
-2
-1
0
1 at 3714.906 kb on - strand, within BWI76_RS17865 at 3714.927 kb on + strand, within BWI76_RS17865 at 3714.965 kb on + strand, within BWI76_RS17865 at 3714.974 kb on - strand, within BWI76_RS17865 at 3714.975 kb on + strand, within BWI76_RS17865 at 3715.131 kb on - strand, within BWI76_RS17865 at 3715.175 kb on + strand, within BWI76_RS17865 at 3715.221 kb on - strand, within BWI76_RS17865 at 3715.221 kb on - strand, within BWI76_RS17865 at 3715.391 kb on - strand, within BWI76_RS17865 at 3715.940 kb on + strand, within BWI76_RS17870 at 3715.964 kb on - strand, within BWI76_RS17870 at 3716.079 kb on - strand, within BWI76_RS17870 at 3716.091 kb on - strand, within BWI76_RS17870 at 3716.219 kb on + strand, within BWI76_RS17870 at 3716.236 kb on - strand, within BWI76_RS17870 at 3716.320 kb on - strand at 3717.066 kb on + strand, within BWI76_RS17875
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,714,906 - BWI76_RS17865 0.39 -0.6 3,714,927 + BWI76_RS17865 0.41 +0.7 3,714,965 + BWI76_RS17865 0.44 +1.1 3,714,974 - BWI76_RS17865 0.44 +0.2 3,714,975 + BWI76_RS17865 0.44 +0.2 3,715,131 - BWI76_RS17865 0.56 +0.0 3,715,175 + BWI76_RS17865 0.59 +0.9 3,715,221 - BWI76_RS17865 0.62 +0.3 3,715,221 - BWI76_RS17865 0.62 -1.1 3,715,391 - BWI76_RS17865 0.75 -1.4 3,715,940 + BWI76_RS17870 0.36 +0.0 3,715,964 - BWI76_RS17870 0.40 -1.1 3,716,079 - BWI76_RS17870 0.60 -0.7 3,716,091 - BWI76_RS17870 0.62 -2.0 3,716,219 + BWI76_RS17870 0.84 -0.1 3,716,236 - BWI76_RS17870 0.87 -0.4 3,716,320 - -0.5 3,717,066 + BWI76_RS17875 0.43 -0.3
Or see this region's nucleotide sequence