Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13680 and BWI76_RS13685 are separated by 4 nucleotides BWI76_RS13685 and BWI76_RS13690 are separated by 261 nucleotides
BWI76_RS13680: BWI76_RS13680 - methyl viologen resistance protein SmvA, at 2,854,481 to 2,855,971
_RS13680
BWI76_RS13685: BWI76_RS13685 - IclR family transcriptional regulator, at 2,855,976 to 2,856,773
_RS13685
BWI76_RS13690: BWI76_RS13690 - muconate and chloromuconate cycloisomerase, at 2,857,035 to 2,858,153
_RS13690
Position (kb)
2855
2856
2857 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2855.146 kb on + strand, within BWI76_RS13680 at 2855.196 kb on - strand, within BWI76_RS13680 at 2855.310 kb on + strand, within BWI76_RS13680 at 2855.815 kb on + strand, within BWI76_RS13680 at 2856.585 kb on + strand, within BWI76_RS13685 at 2856.657 kb on - strand, within BWI76_RS13685 at 2857.252 kb on + strand at 2857.306 kb on + strand, within BWI76_RS13690 at 2857.314 kb on - strand, within BWI76_RS13690 at 2857.323 kb on + strand, within BWI76_RS13690 at 2857.379 kb on + strand, within BWI76_RS13690 at 2857.387 kb on - strand, within BWI76_RS13690 at 2857.387 kb on - strand, within BWI76_RS13690 at 2857.412 kb on + strand, within BWI76_RS13690 at 2857.457 kb on + strand, within BWI76_RS13690 at 2857.721 kb on + strand at 2857.729 kb on - strand, within BWI76_RS13690
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,855,146 + BWI76_RS13680 0.45 +0.7 2,855,196 - BWI76_RS13680 0.48 -0.3 2,855,310 + BWI76_RS13680 0.56 -3.1 2,855,815 + BWI76_RS13680 0.89 -0.2 2,856,585 + BWI76_RS13685 0.76 +1.0 2,856,657 - BWI76_RS13685 0.85 +1.0 2,857,252 + +1.4 2,857,306 + BWI76_RS13690 0.24 -1.1 2,857,314 - BWI76_RS13690 0.25 -0.5 2,857,323 + BWI76_RS13690 0.26 -1.0 2,857,379 + BWI76_RS13690 0.31 +0.1 2,857,387 - BWI76_RS13690 0.31 +0.6 2,857,387 - BWI76_RS13690 0.31 -1.9 2,857,412 + BWI76_RS13690 0.34 +1.2 2,857,457 + BWI76_RS13690 0.38 +0.9 2,857,721 + +0.9 2,857,729 - BWI76_RS13690 0.62 -0.5
Or see this region's nucleotide sequence