Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08245 and BWI76_RS08250 are separated by 52 nucleotides BWI76_RS08250 and BWI76_RS08255 overlap by 14 nucleotides
BWI76_RS08245: BWI76_RS08245 - MFS transporter, at 1,745,104 to 1,746,399
_RS08245
BWI76_RS08250: BWI76_RS08250 - tricarballylate utilization protein B, at 1,746,452 to 1,747,591
_RS08250
BWI76_RS08255: BWI76_RS08255 - tricarballylate dehydrogenase, at 1,747,578 to 1,748,981
_RS08255
Position (kb)
1746
1747
1748 Strain fitness (log2 ratio)
-1
0
1 at 1745.456 kb on + strand, within BWI76_RS08245 at 1745.570 kb on + strand, within BWI76_RS08245 at 1745.754 kb on + strand at 1746.007 kb on + strand at 1746.365 kb on - strand at 1746.439 kb on + strand at 1746.452 kb on - strand at 1746.739 kb on + strand, within BWI76_RS08250 at 1746.936 kb on - strand, within BWI76_RS08250 at 1746.936 kb on - strand, within BWI76_RS08250 at 1747.282 kb on - strand, within BWI76_RS08250 at 1747.506 kb on + strand at 1747.605 kb on - strand at 1748.208 kb on + strand, within BWI76_RS08255 at 1748.216 kb on - strand, within BWI76_RS08255 at 1748.299 kb on + strand, within BWI76_RS08255 at 1748.336 kb on + strand, within BWI76_RS08255 at 1748.344 kb on - strand, within BWI76_RS08255 at 1748.584 kb on + strand, within BWI76_RS08255
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,745,456 + BWI76_RS08245 0.27 -0.1 1,745,570 + BWI76_RS08245 0.36 -0.3 1,745,754 + -0.1 1,746,007 + -0.1 1,746,365 - +0.8 1,746,439 + +0.5 1,746,452 - -0.8 1,746,739 + BWI76_RS08250 0.25 +1.6 1,746,936 - BWI76_RS08250 0.42 +0.8 1,746,936 - BWI76_RS08250 0.42 +0.6 1,747,282 - BWI76_RS08250 0.73 +0.1 1,747,506 + +1.1 1,747,605 - +0.7 1,748,208 + BWI76_RS08255 0.45 +0.5 1,748,216 - BWI76_RS08255 0.45 +1.0 1,748,299 + BWI76_RS08255 0.51 +0.4 1,748,336 + BWI76_RS08255 0.54 -1.3 1,748,344 - BWI76_RS08255 0.55 +0.3 1,748,584 + BWI76_RS08255 0.72 +0.8
Or see this region's nucleotide sequence