Experiment: RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03785 and BWI76_RS03790 are separated by 82 nucleotides BWI76_RS03790 and BWI76_RS03795 are separated by 178 nucleotides BWI76_RS03795 and BWI76_RS03800 are separated by 45 nucleotides BWI76_RS03800 and BWI76_RS03805 overlap by 1 nucleotides
BWI76_RS03785: BWI76_RS03785 - AraC family transcriptional regulator, at 783,469 to 784,284
_RS03785
BWI76_RS03790: BWI76_RS03790 - hypothetical protein, at 784,367 to 784,822
_RS03790
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
BWI76_RS03800: BWI76_RS03800 - hypothetical protein, at 786,417 to 786,737
_RS03800
BWI76_RS03805: BWI76_RS03805 - porin, at 786,737 to 787,282
_RS03805
Position (kb) 785
786
787 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 784.028 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.057 kb on + strand, within BWI76_RS03785 at 784.058 kb on - strand, within BWI76_RS03785 at 784.065 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.212 kb on - strand at 784.301 kb on - strand at 784.301 kb on - strand at 784.334 kb on - strand at 784.427 kb on - strand, within BWI76_RS03790 at 784.457 kb on + strand, within BWI76_RS03790 at 784.504 kb on + strand, within BWI76_RS03790 at 784.512 kb on - strand, within BWI76_RS03790 at 784.692 kb on + strand, within BWI76_RS03790 at 784.725 kb on + strand, within BWI76_RS03790 at 784.939 kb on + strand at 784.959 kb on + strand at 784.997 kb on + strand at 785.090 kb on - strand at 785.151 kb on + strand, within BWI76_RS03795 at 785.159 kb on - strand, within BWI76_RS03795 at 785.326 kb on + strand, within BWI76_RS03795 at 785.357 kb on - strand, within BWI76_RS03795 at 785.468 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.618 kb on - strand, within BWI76_RS03795 at 785.664 kb on - strand, within BWI76_RS03795 at 785.720 kb on - strand, within BWI76_RS03795 at 785.778 kb on + strand, within BWI76_RS03795 at 785.791 kb on - strand, within BWI76_RS03795 at 785.811 kb on - strand, within BWI76_RS03795 at 785.951 kb on + strand, within BWI76_RS03795 at 785.951 kb on + strand, within BWI76_RS03795 at 786.054 kb on - strand, within BWI76_RS03795 at 786.070 kb on + strand, within BWI76_RS03795 at 786.101 kb on + strand, within BWI76_RS03795 at 786.171 kb on + strand, within BWI76_RS03795 at 786.233 kb on + strand, within BWI76_RS03795 at 786.247 kb on + strand at 786.270 kb on - strand at 786.574 kb on + strand, within BWI76_RS03800 at 786.582 kb on - strand, within BWI76_RS03800 at 786.768 kb on - strand at 786.905 kb on + strand, within BWI76_RS03805 at 786.924 kb on + strand, within BWI76_RS03805 at 786.936 kb on + strand, within BWI76_RS03805 at 786.937 kb on - strand, within BWI76_RS03805 at 787.215 kb on + strand, within BWI76_RS03805 at 787.244 kb on + strand at 787.252 kb on - strand at 787.259 kb on - strand at 787.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Burkholderia bryophila 376MFSha3.1 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 784,028 + BWI76_RS03785 0.69 +1.5 784,050 + BWI76_RS03785 0.71 +0.2 784,050 + BWI76_RS03785 0.71 +0.1 784,057 + BWI76_RS03785 0.72 -0.1 784,058 - BWI76_RS03785 0.72 -0.5 784,065 - BWI76_RS03785 0.73 -0.3 784,119 - BWI76_RS03785 0.80 -0.2 784,119 - BWI76_RS03785 0.80 +0.1 784,119 - BWI76_RS03785 0.80 +1.0 784,119 - BWI76_RS03785 0.80 -0.4 784,119 - BWI76_RS03785 0.80 +0.4 784,212 - +0.1 784,301 - +1.0 784,301 - +0.4 784,334 - +0.9 784,427 - BWI76_RS03790 0.13 -2.5 784,457 + BWI76_RS03790 0.20 -0.4 784,504 + BWI76_RS03790 0.30 -1.2 784,512 - BWI76_RS03790 0.32 -1.7 784,692 + BWI76_RS03790 0.71 -2.8 784,725 + BWI76_RS03790 0.79 -0.2 784,939 + +0.9 784,959 + +1.3 784,997 + +0.8 785,090 - +0.0 785,151 + BWI76_RS03795 0.11 +0.4 785,159 - BWI76_RS03795 0.12 +0.9 785,326 + BWI76_RS03795 0.24 +0.5 785,357 - BWI76_RS03795 0.26 +0.8 785,468 + BWI76_RS03795 0.34 +0.9 785,610 + BWI76_RS03795 0.44 -0.3 785,610 + BWI76_RS03795 0.44 +0.5 785,618 - BWI76_RS03795 0.45 +1.1 785,664 - BWI76_RS03795 0.48 +0.4 785,720 - BWI76_RS03795 0.52 +0.6 785,778 + BWI76_RS03795 0.57 +0.8 785,791 - BWI76_RS03795 0.58 +0.2 785,811 - BWI76_RS03795 0.59 +0.2 785,951 + BWI76_RS03795 0.69 +0.3 785,951 + BWI76_RS03795 0.69 -0.3 786,054 - BWI76_RS03795 0.77 -0.3 786,070 + BWI76_RS03795 0.78 +0.8 786,101 + BWI76_RS03795 0.80 +0.2 786,171 + BWI76_RS03795 0.85 +0.6 786,233 + BWI76_RS03795 0.90 +0.5 786,247 + -0.5 786,270 - -0.1 786,574 + BWI76_RS03800 0.49 +0.4 786,582 - BWI76_RS03800 0.51 +0.2 786,768 - +0.3 786,905 + BWI76_RS03805 0.31 -0.4 786,924 + BWI76_RS03805 0.34 -0.2 786,936 + BWI76_RS03805 0.36 +1.1 786,937 - BWI76_RS03805 0.37 -0.4 787,215 + BWI76_RS03805 0.88 -2.2 787,244 + +0.1 787,252 - -0.1 787,259 - +0.7 787,292 - -1.5
Or see this region's nucleotide sequence