Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00375 and SMc00376 are separated by 48 nucleotides SMc00376 and SMc00377 are separated by 128 nucleotides SMc00377 and SMc00378 are separated by 118 nucleotides
SMc00375: SMc00375 - oxidoreductase, at 329,317 to 330,303
SMc00375
SMc00376: SMc00376 - hypothetical protein, at 330,352 to 330,762
SMc00376
SMc00377: SMc00377 - hypothetical protein, at 330,891 to 331,682
SMc00377
SMc00378: SMc00378 - exodeoxyribonuclease VII large subunit, at 331,801 to 333,381
SMc00378
Position (kb) 330
331
332 Strain fitness (log2 ratio) -2
-1
0
1 at 329.944 kb on + strand, within SMc00375 at 329.989 kb on + strand, within SMc00375 at 329.989 kb on + strand, within SMc00375 at 329.989 kb on + strand, within SMc00375 at 329.990 kb on - strand, within SMc00375 at 330.046 kb on + strand, within SMc00375 at 330.160 kb on + strand, within SMc00375 at 330.160 kb on + strand, within SMc00375 at 330.265 kb on + strand at 330.266 kb on - strand at 330.345 kb on + strand at 330.822 kb on + strand at 330.822 kb on + strand at 330.823 kb on - strand at 330.886 kb on + strand at 330.887 kb on - strand at 330.887 kb on - strand at 330.985 kb on + strand, within SMc00377 at 330.986 kb on - strand, within SMc00377 at 330.986 kb on - strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.226 kb on + strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.227 kb on - strand, within SMc00377 at 331.751 kb on - strand at 331.751 kb on - strand at 331.751 kb on - strand at 331.754 kb on + strand at 331.754 kb on + strand at 331.754 kb on + strand at 331.963 kb on + strand, within SMc00378 at 331.963 kb on + strand, within SMc00378 at 331.964 kb on - strand, within SMc00378
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 329,944 + SMc00375 0.64 -0.1 329,989 + SMc00375 0.68 -0.3 329,989 + SMc00375 0.68 -1.2 329,989 + SMc00375 0.68 -0.3 329,990 - SMc00375 0.68 -0.1 330,046 + SMc00375 0.74 -0.3 330,160 + SMc00375 0.85 -0.7 330,160 + SMc00375 0.85 -0.3 330,265 + +0.0 330,266 - -0.2 330,345 + +0.1 330,822 + +0.0 330,822 + -0.3 330,823 - -0.7 330,886 + +0.1 330,887 - -0.7 330,887 - -0.7 330,985 + SMc00377 0.12 -0.4 330,986 - SMc00377 0.12 -0.4 330,986 - SMc00377 0.12 +0.5 331,226 + SMc00377 0.42 -0.8 331,226 + SMc00377 0.42 -0.5 331,226 + SMc00377 0.42 -0.2 331,227 - SMc00377 0.42 -0.4 331,227 - SMc00377 0.42 +0.1 331,227 - SMc00377 0.42 -2.2 331,751 - -0.2 331,751 - -0.3 331,751 - +0.1 331,754 + -0.1 331,754 + -0.2 331,754 + -0.0 331,963 + SMc00378 0.10 -1.0 331,963 + SMc00378 0.10 +1.6 331,964 - SMc00378 0.10 -0.2
Or see this region's nucleotide sequence