Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20936

Experiment: D-Leucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20933 and SM_b20934 overlap by 4 nucleotidesSM_b20934 and SM_b20935 overlap by 62 nucleotidesSM_b20935 and SM_b20936 are separated by 221 nucleotidesSM_b20936 and SM_b20937 are separated by 38 nucleotides SM_b20933: SM_b20933 - two-component sensor histidine kinase, at 1,157,697 to 1,160,420 _b20933 SM_b20934: SM_b20934 - two-component response regulator protein, at 1,160,417 to 1,160,953 _b20934 SM_b20935: SM_b20935 - transcriptional regulator, at 1,160,892 to 1,161,143 _b20935 SM_b20936: SM_b20936 - hypothetical protein, at 1,161,365 to 1,161,952 _b20936 SM_b20937: SM_b20937 - ABC transporter ATP-binding protein/permease, at 1,161,991 to 1,163,811 _b20937 Position (kb) 1161 1162Strain fitness (log2 ratio) -2 -1 0 1 2at 1160.377 kb on + strandat 1160.377 kb on + strandat 1160.377 kb on + strandat 1160.378 kb on - strandat 1160.581 kb on + strand, within SM_b20934at 1160.582 kb on - strand, within SM_b20934at 1160.672 kb on + strand, within SM_b20934at 1160.675 kb on - strand, within SM_b20934at 1160.675 kb on - strand, within SM_b20934at 1160.772 kb on + strand, within SM_b20934at 1160.809 kb on + strand, within SM_b20934at 1160.814 kb on + strand, within SM_b20934at 1160.814 kb on + strand, within SM_b20934at 1160.815 kb on - strand, within SM_b20934at 1160.878 kb on + strand, within SM_b20934at 1160.879 kb on - strand, within SM_b20934at 1160.931 kb on + strandat 1161.044 kb on - strand, within SM_b20935at 1161.044 kb on - strand, within SM_b20935at 1161.137 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.143 kb on + strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.144 kb on - strandat 1161.326 kb on - strandat 1161.571 kb on - strand, within SM_b20936at 1161.590 kb on + strand, within SM_b20936at 1161.621 kb on + strand, within SM_b20936at 1161.621 kb on + strand, within SM_b20936at 1161.622 kb on - strand, within SM_b20936at 1161.622 kb on - strand, within SM_b20936at 1161.704 kb on - strand, within SM_b20936at 1161.709 kb on + strand, within SM_b20936at 1161.710 kb on - strand, within SM_b20936at 1161.710 kb on - strand, within SM_b20936at 1161.721 kb on + strand, within SM_b20936at 1161.722 kb on - strand, within SM_b20936at 1161.733 kb on + strand, within SM_b20936at 1161.733 kb on + strand, within SM_b20936at 1161.734 kb on - strand, within SM_b20936at 1161.739 kb on - strand, within SM_b20936at 1161.766 kb on - strand, within SM_b20936at 1161.766 kb on - strand, within SM_b20936at 1161.766 kb on - strand, within SM_b20936at 1161.776 kb on + strand, within SM_b20936at 1161.951 kb on - strandat 1162.056 kb on + strandat 1162.056 kb on + strandat 1162.056 kb on + strandat 1162.057 kb on - strandat 1162.057 kb on - strandat 1162.117 kb on - strandat 1162.117 kb on - strandat 1162.121 kb on + strandat 1162.122 kb on - strandat 1162.149 kb on - strandat 1162.149 kb on - strandat 1162.251 kb on + strand, within SM_b20937at 1162.251 kb on + strand, within SM_b20937at 1162.251 kb on + strand, within SM_b20937at 1162.252 kb on - strand, within SM_b20937at 1162.252 kb on - strand, within SM_b20937at 1162.252 kb on - strand, within SM_b20937at 1162.252 kb on - strand, within SM_b20937at 1162.597 kb on + strand, within SM_b20937at 1162.597 kb on + strand, within SM_b20937at 1162.598 kb on - strand, within SM_b20937at 1162.740 kb on + strand, within SM_b20937at 1162.740 kb on + strand, within SM_b20937at 1162.740 kb on + strand, within SM_b20937at 1162.741 kb on - strand, within SM_b20937at 1162.832 kb on + strand, within SM_b20937at 1162.833 kb on - strand, within SM_b20937at 1162.874 kb on - strand, within SM_b20937at 1162.899 kb on + strand, within SM_b20937at 1162.900 kb on - strand, within SM_b20937

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Leucrose (C)
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1,160,377 + -0.1
1,160,377 + -0.5
1,160,377 + +1.1
1,160,378 - +0.2
1,160,581 + SM_b20934 0.31 -0.6
1,160,582 - SM_b20934 0.31 +0.1
1,160,672 + SM_b20934 0.47 -0.2
1,160,675 - SM_b20934 0.48 +0.2
1,160,675 - SM_b20934 0.48 +0.3
1,160,772 + SM_b20934 0.66 +0.7
1,160,809 + SM_b20934 0.73 +1.1
1,160,814 + SM_b20934 0.74 -0.2
1,160,814 + SM_b20934 0.74 +0.0
1,160,815 - SM_b20934 0.74 +0.9
1,160,878 + SM_b20934 0.86 -0.0
1,160,879 - SM_b20934 0.86 +0.1
1,160,931 + +0.2
1,161,044 - SM_b20935 0.60 -0.3
1,161,044 - SM_b20935 0.60 +0.4
1,161,137 + -0.8
1,161,143 + -0.0
1,161,143 + -0.6
1,161,143 + -0.2
1,161,143 + +0.0
1,161,143 + -0.3
1,161,144 - -0.2
1,161,144 - +0.1
1,161,144 - +0.3
1,161,144 - -0.0
1,161,144 - -1.0
1,161,144 - -0.1
1,161,144 - +0.1
1,161,144 - +0.6
1,161,144 - +1.2
1,161,326 - -0.3
1,161,571 - SM_b20936 0.35 -0.2
1,161,590 + SM_b20936 0.38 +0.2
1,161,621 + SM_b20936 0.44 -0.9
1,161,621 + SM_b20936 0.44 -0.1
1,161,622 - SM_b20936 0.44 +0.4
1,161,622 - SM_b20936 0.44 +0.4
1,161,704 - SM_b20936 0.58 -0.1
1,161,709 + SM_b20936 0.59 +0.6
1,161,710 - SM_b20936 0.59 +0.8
1,161,710 - SM_b20936 0.59 +1.6
1,161,721 + SM_b20936 0.61 -0.6
1,161,722 - SM_b20936 0.61 +1.1
1,161,733 + SM_b20936 0.63 +0.6
1,161,733 + SM_b20936 0.63 +1.1
1,161,734 - SM_b20936 0.63 +0.0
1,161,739 - SM_b20936 0.64 +0.7
1,161,766 - SM_b20936 0.68 -0.2
1,161,766 - SM_b20936 0.68 +0.8
1,161,766 - SM_b20936 0.68 -0.2
1,161,776 + SM_b20936 0.70 +1.2
1,161,951 - +0.3
1,162,056 + +2.6
1,162,056 + -0.1
1,162,056 + +0.3
1,162,057 - -0.1
1,162,057 - +0.0
1,162,117 - +0.4
1,162,117 - -0.2
1,162,121 + -0.1
1,162,122 - -0.1
1,162,149 - -0.2
1,162,149 - +0.1
1,162,251 + SM_b20937 0.14 +0.2
1,162,251 + SM_b20937 0.14 +2.0
1,162,251 + SM_b20937 0.14 -1.0
1,162,252 - SM_b20937 0.14 +0.0
1,162,252 - SM_b20937 0.14 +0.2
1,162,252 - SM_b20937 0.14 -0.2
1,162,252 - SM_b20937 0.14 +1.3
1,162,597 + SM_b20937 0.33 +0.5
1,162,597 + SM_b20937 0.33 +0.5
1,162,598 - SM_b20937 0.33 -0.5
1,162,740 + SM_b20937 0.41 +0.1
1,162,740 + SM_b20937 0.41 +0.2
1,162,740 + SM_b20937 0.41 +0.9
1,162,741 - SM_b20937 0.41 +0.7
1,162,832 + SM_b20937 0.46 -1.0
1,162,833 - SM_b20937 0.46 -0.3
1,162,874 - SM_b20937 0.48 -2.0
1,162,899 + SM_b20937 0.50 -0.2
1,162,900 - SM_b20937 0.50 -0.7

Or see this region's nucleotide sequence