Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20570

Experiment: D-Leucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20568 and SM_b20569 are separated by 139 nucleotidesSM_b20569 and SM_b20570 are separated by 10 nucleotidesSM_b20570 and SM_b20571 are separated by 96 nucleotidesSM_b20571 and SM_b21691 are separated by 16 nucleotides SM_b20568: SM_b20568 - amino acid ABC transporter substrate-binding protein, at 1,580,560 to 1,581,771 _b20568 SM_b20569: SM_b20569 - ABC transporter ATP-binding protein, at 1,581,911 to 1,582,681 _b20569 SM_b20570: SM_b20570 - aliphatic sulfonate ABC transporter substrate-binding protein, at 1,582,692 to 1,583,684 _b20570 SM_b20571: SM_b20571 - aliphatic sulfonate ABC transporter permease, at 1,583,781 to 1,584,626 _b20571 SM_b21691: SM_b21691 - nitrilotriacetate monooxygenase subunit A, at 1,584,643 to 1,585,992 _b21691 Position (kb) 1582 1583 1584Strain fitness (log2 ratio) -1 0 1 2at 1581.731 kb on + strandat 1581.732 kb on - strandat 1581.783 kb on - strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.843 kb on + strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.844 kb on - strandat 1581.912 kb on + strandat 1581.913 kb on - strandat 1582.038 kb on - strand, within SM_b20569at 1582.059 kb on + strand, within SM_b20569at 1582.059 kb on + strand, within SM_b20569at 1582.059 kb on + strand, within SM_b20569at 1582.060 kb on - strand, within SM_b20569at 1582.060 kb on - strand, within SM_b20569at 1582.060 kb on - strand, within SM_b20569at 1582.205 kb on + strand, within SM_b20569at 1582.254 kb on - strand, within SM_b20569at 1582.305 kb on + strand, within SM_b20569at 1582.305 kb on + strand, within SM_b20569at 1582.306 kb on - strand, within SM_b20569at 1582.306 kb on - strand, within SM_b20569at 1582.590 kb on - strand, within SM_b20569at 1582.747 kb on + strandat 1582.748 kb on - strandat 1582.748 kb on - strandat 1582.748 kb on - strandat 1582.748 kb on - strandat 1582.892 kb on + strand, within SM_b20570at 1582.892 kb on + strand, within SM_b20570at 1582.962 kb on + strand, within SM_b20570at 1582.962 kb on + strand, within SM_b20570at 1582.963 kb on - strand, within SM_b20570at 1583.243 kb on - strand, within SM_b20570at 1583.264 kb on + strand, within SM_b20570at 1583.264 kb on + strand, within SM_b20570at 1583.283 kb on - strand, within SM_b20570at 1583.329 kb on + strand, within SM_b20570at 1583.330 kb on - strand, within SM_b20570at 1583.330 kb on - strand, within SM_b20570at 1583.543 kb on - strand, within SM_b20570at 1583.777 kb on - strandat 1583.905 kb on + strand, within SM_b20571at 1583.905 kb on + strand, within SM_b20571at 1584.073 kb on + strand, within SM_b20571at 1584.312 kb on + strand, within SM_b20571at 1584.313 kb on - strand, within SM_b20571at 1584.314 kb on + strand, within SM_b20571at 1584.315 kb on - strand, within SM_b20571at 1584.334 kb on - strand, within SM_b20571at 1584.557 kb on - strandat 1584.645 kb on - strandat 1584.645 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Leucrose (C)
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1,581,731 + -0.6
1,581,732 - -0.1
1,581,783 - +0.4
1,581,843 + -0.8
1,581,843 + +0.1
1,581,843 + -0.5
1,581,843 + -0.7
1,581,843 + +1.8
1,581,843 + +0.1
1,581,843 + +0.2
1,581,844 - -0.5
1,581,844 - +0.4
1,581,844 - +1.1
1,581,844 - +0.0
1,581,844 - -0.4
1,581,844 - +0.2
1,581,844 - +0.5
1,581,844 - -0.2
1,581,844 - +0.0
1,581,844 - -0.3
1,581,844 - +0.9
1,581,912 + -0.2
1,581,913 - +0.0
1,582,038 - SM_b20569 0.16 -0.6
1,582,059 + SM_b20569 0.19 +0.1
1,582,059 + SM_b20569 0.19 -0.2
1,582,059 + SM_b20569 0.19 -0.4
1,582,060 - SM_b20569 0.19 -0.9
1,582,060 - SM_b20569 0.19 +0.5
1,582,060 - SM_b20569 0.19 -0.5
1,582,205 + SM_b20569 0.38 +1.5
1,582,254 - SM_b20569 0.44 -0.6
1,582,305 + SM_b20569 0.51 -0.3
1,582,305 + SM_b20569 0.51 -0.9
1,582,306 - SM_b20569 0.51 +0.2
1,582,306 - SM_b20569 0.51 -0.9
1,582,590 - SM_b20569 0.88 +0.4
1,582,747 + +0.3
1,582,748 - -0.3
1,582,748 - +1.8
1,582,748 - -0.1
1,582,748 - -0.4
1,582,892 + SM_b20570 0.20 -0.7
1,582,892 + SM_b20570 0.20 -1.6
1,582,962 + SM_b20570 0.27 -1.0
1,582,962 + SM_b20570 0.27 -0.5
1,582,963 - SM_b20570 0.27 -1.6
1,583,243 - SM_b20570 0.55 -1.0
1,583,264 + SM_b20570 0.58 -0.4
1,583,264 + SM_b20570 0.58 -0.7
1,583,283 - SM_b20570 0.60 -0.8
1,583,329 + SM_b20570 0.64 -1.2
1,583,330 - SM_b20570 0.64 -0.2
1,583,330 - SM_b20570 0.64 -0.6
1,583,543 - SM_b20570 0.86 -0.3
1,583,777 - +0.2
1,583,905 + SM_b20571 0.15 -0.3
1,583,905 + SM_b20571 0.15 -0.5
1,584,073 + SM_b20571 0.35 +0.3
1,584,312 + SM_b20571 0.63 +0.2
1,584,313 - SM_b20571 0.63 -1.0
1,584,314 + SM_b20571 0.63 -0.1
1,584,315 - SM_b20571 0.63 -0.5
1,584,334 - SM_b20571 0.65 -1.6
1,584,557 - -0.3
1,584,645 - -0.5
1,584,645 - -0.0

Or see this region's nucleotide sequence