Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27935 and BWI76_RS27940 overlap by 4 nucleotides BWI76_RS27940 and BWI76_RS27945 overlap by 17 nucleotides BWI76_RS27945 and BWI76_RS27950 overlap by 4 nucleotides
BWI76_RS27935: BWI76_RS27935 - galactonate dehydratase, at 5,793,557 to 5,794,705
_RS27935
BWI76_RS27940: BWI76_RS27940 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 5,794,702 to 5,795,319
_RS27940
BWI76_RS27945: BWI76_RS27945 - 2-oxo-3-deoxygalactonate kinase, at 5,795,303 to 5,796,178
_RS27945
BWI76_RS27950: BWI76_RS27950 - transcriptional regulator, at 5,796,175 to 5,796,864
_RS27950
Position (kb) 5794
5795
5796 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5793.734 kb on + strand, within BWI76_RS27935 at 5793.734 kb on + strand, within BWI76_RS27935 at 5793.752 kb on + strand, within BWI76_RS27935 at 5793.755 kb on + strand, within BWI76_RS27935 at 5793.760 kb on - strand, within BWI76_RS27935 at 5793.763 kb on + strand, within BWI76_RS27935 at 5793.763 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.765 kb on + strand, within BWI76_RS27935 at 5793.771 kb on - strand, within BWI76_RS27935 at 5793.771 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.773 kb on - strand, within BWI76_RS27935 at 5793.787 kb on - strand, within BWI76_RS27935 at 5793.787 kb on - strand at 5793.787 kb on - strand, within BWI76_RS27935 at 5793.787 kb on - strand, within BWI76_RS27935 at 5793.789 kb on + strand, within BWI76_RS27935 at 5793.790 kb on - strand, within BWI76_RS27935 at 5793.797 kb on - strand, within BWI76_RS27935 at 5793.797 kb on - strand, within BWI76_RS27935 at 5793.822 kb on - strand, within BWI76_RS27935 at 5793.824 kb on + strand, within BWI76_RS27935 at 5793.825 kb on - strand, within BWI76_RS27935 at 5793.829 kb on + strand, within BWI76_RS27935 at 5793.840 kb on - strand, within BWI76_RS27935 at 5793.849 kb on - strand, within BWI76_RS27935 at 5793.851 kb on + strand, within BWI76_RS27935 at 5793.854 kb on - strand, within BWI76_RS27935 at 5793.869 kb on + strand, within BWI76_RS27935 at 5793.869 kb on + strand, within BWI76_RS27935 at 5793.869 kb on + strand, within BWI76_RS27935 at 5793.869 kb on + strand, within BWI76_RS27935 at 5793.869 kb on + strand, within BWI76_RS27935 at 5793.869 kb on + strand, within BWI76_RS27935 at 5793.869 kb on + strand, within BWI76_RS27935 at 5793.870 kb on + strand, within BWI76_RS27935 at 5793.875 kb on + strand, within BWI76_RS27935 at 5793.877 kb on - strand, within BWI76_RS27935 at 5793.877 kb on - strand, within BWI76_RS27935 at 5793.877 kb on - strand, within BWI76_RS27935 at 5793.877 kb on - strand, within BWI76_RS27935 at 5793.877 kb on - strand, within BWI76_RS27935 at 5793.877 kb on - strand, within BWI76_RS27935 at 5793.877 kb on - strand, within BWI76_RS27935 at 5793.902 kb on + strand, within BWI76_RS27935 at 5793.907 kb on + strand, within BWI76_RS27935 at 5793.940 kb on + strand, within BWI76_RS27935 at 5794.018 kb on + strand, within BWI76_RS27935 at 5794.018 kb on + strand, within BWI76_RS27935 at 5794.025 kb on + strand, within BWI76_RS27935 at 5794.026 kb on - strand, within BWI76_RS27935 at 5794.026 kb on - strand, within BWI76_RS27935 at 5794.088 kb on - strand, within BWI76_RS27935 at 5794.128 kb on - strand, within BWI76_RS27935 at 5794.145 kb on - strand, within BWI76_RS27935 at 5794.189 kb on + strand, within BWI76_RS27935 at 5794.217 kb on - strand, within BWI76_RS27935 at 5794.239 kb on - strand, within BWI76_RS27935 at 5794.256 kb on - strand, within BWI76_RS27935 at 5794.256 kb on - strand, within BWI76_RS27935 at 5794.257 kb on - strand, within BWI76_RS27935 at 5794.258 kb on + strand, within BWI76_RS27935 at 5794.258 kb on - strand, within BWI76_RS27935 at 5794.273 kb on + strand, within BWI76_RS27935 at 5794.281 kb on - strand, within BWI76_RS27935 at 5794.360 kb on - strand, within BWI76_RS27935 at 5794.487 kb on + strand, within BWI76_RS27935 at 5794.509 kb on + strand, within BWI76_RS27935 at 5794.529 kb on - strand, within BWI76_RS27935 at 5794.573 kb on - strand, within BWI76_RS27935 at 5794.587 kb on - strand, within BWI76_RS27935 at 5794.715 kb on - strand at 5794.914 kb on - strand at 5795.026 kb on - strand, within BWI76_RS27940 at 5795.105 kb on - strand, within BWI76_RS27940 at 5795.111 kb on + strand, within BWI76_RS27940 at 5795.276 kb on - strand at 5795.291 kb on - strand at 5795.330 kb on + strand at 5795.338 kb on - strand at 5795.409 kb on - strand, within BWI76_RS27945 at 5795.707 kb on - strand, within BWI76_RS27945 at 5795.707 kb on - strand, within BWI76_RS27945 at 5795.815 kb on + strand, within BWI76_RS27945 at 5796.152 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,793,734 + BWI76_RS27935 0.15 -0.1 5,793,734 + BWI76_RS27935 0.15 +0.4 5,793,752 + BWI76_RS27935 0.17 +0.5 5,793,755 + BWI76_RS27935 0.17 -2.6 5,793,760 - BWI76_RS27935 0.18 -0.8 5,793,763 + BWI76_RS27935 0.18 -0.1 5,793,763 + BWI76_RS27935 0.18 +0.5 5,793,765 + BWI76_RS27935 0.18 -0.3 5,793,765 + BWI76_RS27935 0.18 +1.2 5,793,765 + BWI76_RS27935 0.18 +0.2 5,793,765 + BWI76_RS27935 0.18 +0.6 5,793,765 + BWI76_RS27935 0.18 -0.2 5,793,765 + BWI76_RS27935 0.18 +0.3 5,793,765 + BWI76_RS27935 0.18 -1.4 5,793,765 + BWI76_RS27935 0.18 +0.4 5,793,765 + BWI76_RS27935 0.18 +0.5 5,793,765 + BWI76_RS27935 0.18 +1.2 5,793,765 + BWI76_RS27935 0.18 +1.2 5,793,771 - BWI76_RS27935 0.19 -1.8 5,793,771 - BWI76_RS27935 0.19 +0.2 5,793,773 - BWI76_RS27935 0.19 -0.2 5,793,773 - BWI76_RS27935 0.19 -0.2 5,793,773 - BWI76_RS27935 0.19 -0.1 5,793,773 - +0.6 5,793,773 - BWI76_RS27935 0.19 +0.2 5,793,773 - BWI76_RS27935 0.19 +0.2 5,793,773 - BWI76_RS27935 0.19 -1.4 5,793,773 - BWI76_RS27935 0.19 -0.5 5,793,773 - BWI76_RS27935 0.19 -1.4 5,793,773 - BWI76_RS27935 0.19 -3.5 5,793,773 - BWI76_RS27935 0.19 +0.5 5,793,773 - BWI76_RS27935 0.19 +1.3 5,793,773 - BWI76_RS27935 0.19 +0.4 5,793,773 - BWI76_RS27935 0.19 -0.3 5,793,773 - BWI76_RS27935 0.19 +1.7 5,793,773 - BWI76_RS27935 0.19 -2.3 5,793,787 - BWI76_RS27935 0.20 +1.1 5,793,787 - +0.2 5,793,787 - BWI76_RS27935 0.20 +1.2 5,793,787 - BWI76_RS27935 0.20 -0.4 5,793,789 + BWI76_RS27935 0.20 -1.1 5,793,790 - BWI76_RS27935 0.20 -1.8 5,793,797 - BWI76_RS27935 0.21 -0.7 5,793,797 - BWI76_RS27935 0.21 -2.9 5,793,822 - BWI76_RS27935 0.23 +0.6 5,793,824 + BWI76_RS27935 0.23 -0.3 5,793,825 - BWI76_RS27935 0.23 +0.2 5,793,829 + BWI76_RS27935 0.24 -1.6 5,793,840 - BWI76_RS27935 0.25 -0.0 5,793,849 - BWI76_RS27935 0.25 +0.2 5,793,851 + BWI76_RS27935 0.26 -1.2 5,793,854 - BWI76_RS27935 0.26 -1.2 5,793,869 + BWI76_RS27935 0.27 +1.2 5,793,869 + BWI76_RS27935 0.27 +0.7 5,793,869 + BWI76_RS27935 0.27 -1.4 5,793,869 + BWI76_RS27935 0.27 -1.1 5,793,869 + BWI76_RS27935 0.27 -0.1 5,793,869 + BWI76_RS27935 0.27 +1.7 5,793,869 + BWI76_RS27935 0.27 -1.2 5,793,870 + BWI76_RS27935 0.27 +0.8 5,793,875 + BWI76_RS27935 0.28 +0.2 5,793,877 - BWI76_RS27935 0.28 -0.2 5,793,877 - BWI76_RS27935 0.28 +0.8 5,793,877 - BWI76_RS27935 0.28 -2.0 5,793,877 - BWI76_RS27935 0.28 +0.0 5,793,877 - BWI76_RS27935 0.28 -0.4 5,793,877 - BWI76_RS27935 0.28 +0.2 5,793,877 - BWI76_RS27935 0.28 -0.1 5,793,902 + BWI76_RS27935 0.30 +0.5 5,793,907 + BWI76_RS27935 0.30 +0.2 5,793,940 + BWI76_RS27935 0.33 +0.5 5,794,018 + BWI76_RS27935 0.40 +0.4 5,794,018 + BWI76_RS27935 0.40 +0.2 5,794,025 + BWI76_RS27935 0.41 +1.7 5,794,026 - BWI76_RS27935 0.41 +1.3 5,794,026 - BWI76_RS27935 0.41 -0.0 5,794,088 - BWI76_RS27935 0.46 +0.0 5,794,128 - BWI76_RS27935 0.50 +1.2 5,794,145 - BWI76_RS27935 0.51 -0.9 5,794,189 + BWI76_RS27935 0.55 +1.2 5,794,217 - BWI76_RS27935 0.57 -0.2 5,794,239 - BWI76_RS27935 0.59 -0.4 5,794,256 - BWI76_RS27935 0.61 +0.1 5,794,256 - BWI76_RS27935 0.61 -3.4 5,794,257 - BWI76_RS27935 0.61 -0.4 5,794,258 + BWI76_RS27935 0.61 +0.7 5,794,258 - BWI76_RS27935 0.61 -0.0 5,794,273 + BWI76_RS27935 0.62 +3.2 5,794,281 - BWI76_RS27935 0.63 -0.8 5,794,360 - BWI76_RS27935 0.70 -0.1 5,794,487 + BWI76_RS27935 0.81 -0.1 5,794,509 + BWI76_RS27935 0.83 +0.6 5,794,529 - BWI76_RS27935 0.85 -1.6 5,794,573 - BWI76_RS27935 0.88 -0.1 5,794,587 - BWI76_RS27935 0.90 +0.3 5,794,715 - +0.4 5,794,914 - +1.2 5,795,026 - BWI76_RS27940 0.52 -2.3 5,795,105 - BWI76_RS27940 0.65 -0.8 5,795,111 + BWI76_RS27940 0.66 -0.9 5,795,276 - +0.5 5,795,291 - +0.6 5,795,330 + -0.2 5,795,338 - +0.2 5,795,409 - BWI76_RS27945 0.12 +0.3 5,795,707 - BWI76_RS27945 0.46 -0.4 5,795,707 - BWI76_RS27945 0.46 +1.5 5,795,815 + BWI76_RS27945 0.58 +0.4 5,796,152 + -1.3
Or see this region's nucleotide sequence