Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26950 and BWI76_RS26955 are separated by 101 nucleotides BWI76_RS26955 and BWI76_RS26960 are separated by 24 nucleotides
BWI76_RS26950: BWI76_RS26950 - 2-dehydro-3-deoxygluconokinase, at 5,590,440 to 5,591,378
_RS26950
BWI76_RS26955: BWI76_RS26955 - MFS transporter, at 5,591,480 to 5,592,760
_RS26955
BWI76_RS26960: BWI76_RS26960 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 5,592,785 to 5,593,756
_RS26960
Position (kb) 5591
5592
5593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5590.562 kb on - strand, within BWI76_RS26950 at 5590.577 kb on + strand, within BWI76_RS26950 at 5590.588 kb on + strand, within BWI76_RS26950 at 5590.627 kb on + strand, within BWI76_RS26950 at 5590.676 kb on - strand, within BWI76_RS26950 at 5590.876 kb on - strand, within BWI76_RS26950 at 5591.035 kb on + strand, within BWI76_RS26950 at 5591.043 kb on - strand, within BWI76_RS26950 at 5591.346 kb on + strand at 5591.386 kb on - strand at 5591.546 kb on + strand at 5591.580 kb on - strand at 5591.624 kb on - strand, within BWI76_RS26955 at 5591.658 kb on - strand, within BWI76_RS26955 at 5591.720 kb on - strand, within BWI76_RS26955 at 5591.774 kb on + strand, within BWI76_RS26955 at 5591.811 kb on + strand, within BWI76_RS26955 at 5591.813 kb on - strand, within BWI76_RS26955 at 5591.893 kb on + strand, within BWI76_RS26955 at 5591.901 kb on - strand, within BWI76_RS26955 at 5591.940 kb on - strand, within BWI76_RS26955 at 5592.016 kb on + strand, within BWI76_RS26955 at 5592.033 kb on + strand, within BWI76_RS26955 at 5592.152 kb on + strand, within BWI76_RS26955 at 5592.182 kb on - strand, within BWI76_RS26955 at 5592.218 kb on - strand, within BWI76_RS26955 at 5592.226 kb on - strand, within BWI76_RS26955 at 5592.303 kb on - strand, within BWI76_RS26955 at 5592.351 kb on - strand, within BWI76_RS26955 at 5592.459 kb on + strand, within BWI76_RS26955 at 5592.459 kb on + strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.488 kb on + strand, within BWI76_RS26955 at 5592.571 kb on + strand, within BWI76_RS26955 at 5592.614 kb on - strand, within BWI76_RS26955 at 5593.068 kb on + strand, within BWI76_RS26960 at 5593.162 kb on + strand, within BWI76_RS26960 at 5593.342 kb on + strand, within BWI76_RS26960 at 5593.406 kb on - strand, within BWI76_RS26960 at 5593.406 kb on - strand, within BWI76_RS26960 at 5593.655 kb on + strand, within BWI76_RS26960 at 5593.663 kb on - strand at 5593.664 kb on + strand at 5593.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 5,590,562 - BWI76_RS26950 0.13 +0.7 5,590,577 + BWI76_RS26950 0.15 +0.8 5,590,588 + BWI76_RS26950 0.16 +0.7 5,590,627 + BWI76_RS26950 0.20 -0.2 5,590,676 - BWI76_RS26950 0.25 -0.0 5,590,876 - BWI76_RS26950 0.46 +0.3 5,591,035 + BWI76_RS26950 0.63 -0.6 5,591,043 - BWI76_RS26950 0.64 -0.4 5,591,346 + +0.9 5,591,386 - +0.4 5,591,546 + +0.2 5,591,580 - -1.7 5,591,624 - BWI76_RS26955 0.11 -0.9 5,591,658 - BWI76_RS26955 0.14 -1.1 5,591,720 - BWI76_RS26955 0.19 -0.0 5,591,774 + BWI76_RS26955 0.23 +0.4 5,591,811 + BWI76_RS26955 0.26 +1.0 5,591,813 - BWI76_RS26955 0.26 -0.2 5,591,893 + BWI76_RS26955 0.32 +0.2 5,591,901 - BWI76_RS26955 0.33 +0.9 5,591,940 - BWI76_RS26955 0.36 -0.2 5,592,016 + BWI76_RS26955 0.42 +1.1 5,592,033 + BWI76_RS26955 0.43 +2.1 5,592,152 + BWI76_RS26955 0.52 +0.6 5,592,182 - BWI76_RS26955 0.55 +1.2 5,592,218 - BWI76_RS26955 0.58 -0.4 5,592,226 - BWI76_RS26955 0.58 +0.0 5,592,303 - BWI76_RS26955 0.64 -0.1 5,592,351 - BWI76_RS26955 0.68 -0.5 5,592,459 + BWI76_RS26955 0.76 +0.4 5,592,459 + BWI76_RS26955 0.76 +1.2 5,592,467 - BWI76_RS26955 0.77 +0.2 5,592,467 - BWI76_RS26955 0.77 +1.5 5,592,467 - BWI76_RS26955 0.77 -1.6 5,592,467 - BWI76_RS26955 0.77 +0.3 5,592,467 - BWI76_RS26955 0.77 -0.0 5,592,488 + BWI76_RS26955 0.79 +0.4 5,592,571 + BWI76_RS26955 0.85 +0.6 5,592,614 - BWI76_RS26955 0.89 +0.6 5,593,068 + BWI76_RS26960 0.29 -0.1 5,593,162 + BWI76_RS26960 0.39 -0.2 5,593,342 + BWI76_RS26960 0.57 -2.9 5,593,406 - BWI76_RS26960 0.64 -0.9 5,593,406 - BWI76_RS26960 0.64 -0.9 5,593,655 + BWI76_RS26960 0.90 -0.0 5,593,663 - -0.2 5,593,664 + -0.3 5,593,724 + -0.1
Or see this region's nucleotide sequence