Experiment: RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09940 and BWI76_RS09945 overlap by 1 nucleotides BWI76_RS09945 and BWI76_RS09950 are separated by 256 nucleotides BWI76_RS09950 and BWI76_RS09955 are separated by 65 nucleotides BWI76_RS09955 and BWI76_RS09960 are separated by 69 nucleotides
BWI76_RS09940: BWI76_RS09940 - paraquat-inducible protein B, at 2,092,453 to 2,094,090
_RS09940
BWI76_RS09945: BWI76_RS09945 - lipoprotein, at 2,094,090 to 2,094,653
_RS09945
BWI76_RS09950: BWI76_RS09950 - ribosome modulation factor, at 2,094,910 to 2,095,077
_RS09950
BWI76_RS09955: BWI76_RS09955 - beta-hydroxydecanoyl-ACP dehydratase, at 2,095,143 to 2,095,661
_RS09955
BWI76_RS09960: BWI76_RS09960 - Lon protease, at 2,095,731 to 2,097,488
_RS09960
Position (kb) 2094
2095
2096 Strain fitness (log2 ratio) -1
0
1 at 2094.080 kb on - strand at 2094.589 kb on + strand, within BWI76_RS09945 at 2094.599 kb on + strand at 2094.599 kb on + strand at 2094.607 kb on - strand at 2095.070 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Dyella japonica UNC79MFTsu3.2 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,094,080 - -1.0 2,094,589 + BWI76_RS09945 0.88 -0.6 2,094,599 + +0.1 2,094,599 + -0.5 2,094,607 - +0.8 2,095,070 - -0.7
Or see this region's nucleotide sequence