Strain Fitness in Sinorhizobium meliloti 1021 around SMa0792

Experiment: palatinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0791 and SMa0792 are separated by 18 nucleotidesSMa0792 and SMa0793 overlap by 4 nucleotidesSMa0793 and SMa0794 overlap by 4 nucleotides SMa0791: SMa0791 - hypothetical protein, at 430,599 to 431,201 SMa0791 SMa0792: SMa0792 - hypothetical protein, at 431,220 to 432,053 SMa0792 SMa0793: SMa0793 - hypothetical protein, at 432,050 to 432,985 SMa0793 SMa0794: SMa0794 - Monoxygenase, at 432,982 to 434,022 SMa0794 Position (kb) 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 430.598 kb on + strandat 430.598 kb on + strandat 430.598 kb on + strandat 430.599 kb on - strandat 430.679 kb on - strand, within SMa0791at 430.679 kb on - strand, within SMa0791at 430.789 kb on + strand, within SMa0791at 430.790 kb on - strand, within SMa0791at 430.793 kb on + strand, within SMa0791at 430.793 kb on + strand, within SMa0791at 430.901 kb on + strand, within SMa0791at 430.924 kb on - strandat 430.950 kb on + strand, within SMa0791at 430.951 kb on - strand, within SMa0791at 430.968 kb on - strand, within SMa0791at 431.041 kb on - strand, within SMa0791at 431.232 kb on - strandat 431.232 kb on - strandat 431.298 kb on + strandat 431.326 kb on + strand, within SMa0792at 431.327 kb on - strand, within SMa0792at 431.327 kb on - strand, within SMa0792at 431.356 kb on + strand, within SMa0792at 431.414 kb on - strand, within SMa0792at 431.414 kb on - strand, within SMa0792at 431.605 kb on - strand, within SMa0792at 431.605 kb on - strand, within SMa0792at 431.791 kb on - strand, within SMa0792at 431.791 kb on - strand, within SMa0792at 431.832 kb on + strand, within SMa0792at 431.833 kb on - strand, within SMa0792at 431.833 kb on - strand, within SMa0792at 431.975 kb on + strandat 431.975 kb on + strandat 431.976 kb on - strandat 431.976 kb on - strandat 431.976 kb on - strandat 431.976 kb on - strandat 431.976 kb on - strandat 431.986 kb on + strandat 431.987 kb on - strandat 432.160 kb on + strand, within SMa0793at 432.175 kb on + strand, within SMa0793at 432.176 kb on - strand, within SMa0793at 432.176 kb on - strand, within SMa0793at 432.236 kb on + strand, within SMa0793at 432.451 kb on - strand, within SMa0793at 432.451 kb on - strand, within SMa0793at 432.451 kb on - strand, within SMa0793at 432.606 kb on + strand, within SMa0793at 432.741 kb on - strand, within SMa0793at 432.874 kb on + strand, within SMa0793at 432.875 kb on - strand, within SMa0793at 432.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction palatinose (C)
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430,598 + -0.3
430,598 + -0.5
430,598 + -0.2
430,599 - -0.5
430,679 - SMa0791 0.13 -0.4
430,679 - SMa0791 0.13 +0.7
430,789 + SMa0791 0.32 -0.2
430,790 - SMa0791 0.32 -0.3
430,793 + SMa0791 0.32 +0.5
430,793 + SMa0791 0.32 +0.1
430,901 + SMa0791 0.50 -0.5
430,924 - -0.5
430,950 + SMa0791 0.58 -0.1
430,951 - SMa0791 0.58 -0.3
430,968 - SMa0791 0.61 -0.2
431,041 - SMa0791 0.73 +0.3
431,232 - -0.4
431,232 - +0.1
431,298 + -0.4
431,326 + SMa0792 0.13 -0.5
431,327 - SMa0792 0.13 -2.2
431,327 - SMa0792 0.13 -1.0
431,356 + SMa0792 0.16 -1.5
431,414 - SMa0792 0.23 -0.1
431,414 - SMa0792 0.23 -0.7
431,605 - SMa0792 0.46 +0.0
431,605 - SMa0792 0.46 +0.1
431,791 - SMa0792 0.68 -0.4
431,791 - SMa0792 0.68 -0.1
431,832 + SMa0792 0.73 -0.7
431,833 - SMa0792 0.74 +0.6
431,833 - SMa0792 0.74 -0.3
431,975 + -0.9
431,975 + -1.8
431,976 - -0.2
431,976 - +0.1
431,976 - -0.7
431,976 - -0.3
431,976 - -0.0
431,986 + -0.8
431,987 - +0.9
432,160 + SMa0793 0.12 +2.0
432,175 + SMa0793 0.13 -1.6
432,176 - SMa0793 0.13 -0.0
432,176 - SMa0793 0.13 -0.1
432,236 + SMa0793 0.20 +1.1
432,451 - SMa0793 0.43 -3.2
432,451 - SMa0793 0.43 -1.1
432,451 - SMa0793 0.43 -0.1
432,606 + SMa0793 0.59 -0.2
432,741 - SMa0793 0.74 +0.0
432,874 + SMa0793 0.88 -0.1
432,875 - SMa0793 0.88 -0.9
432,923 + -2.6

Or see this region's nucleotide sequence