Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19255 and BWI76_RS19260 are separated by 0 nucleotides BWI76_RS19260 and BWI76_RS19265 are separated by 1 nucleotides
BWI76_RS19255: BWI76_RS19255 - multidrug transporter subunit MdtB, at 4,006,342 to 4,009,464
_RS19255
BWI76_RS19260: BWI76_RS19260 - multidrug transporter subunit MdtC, at 4,009,465 to 4,012,542
_RS19260
BWI76_RS19265: BWI76_RS19265 - multidrug transporter subunit MdtD, at 4,012,544 to 4,013,959
_RS19265
Position (kb) 4009
4010
4011
4012
4013 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4008.564 kb on + strand, within BWI76_RS19255 at 4008.643 kb on + strand, within BWI76_RS19255 at 4008.815 kb on + strand, within BWI76_RS19255 at 4009.196 kb on - strand at 4009.196 kb on - strand at 4009.531 kb on - strand at 4009.541 kb on - strand at 4009.797 kb on + strand, within BWI76_RS19260 at 4009.856 kb on + strand, within BWI76_RS19260 at 4009.966 kb on - strand, within BWI76_RS19260 at 4010.021 kb on + strand at 4010.422 kb on + strand, within BWI76_RS19260 at 4010.430 kb on - strand, within BWI76_RS19260 at 4010.509 kb on - strand, within BWI76_RS19260 at 4010.513 kb on + strand, within BWI76_RS19260 at 4010.599 kb on - strand, within BWI76_RS19260 at 4010.685 kb on + strand, within BWI76_RS19260 at 4010.704 kb on + strand, within BWI76_RS19260 at 4011.061 kb on - strand, within BWI76_RS19260 at 4011.383 kb on - strand, within BWI76_RS19260 at 4011.458 kb on - strand, within BWI76_RS19260 at 4011.553 kb on + strand, within BWI76_RS19260 at 4011.878 kb on + strand, within BWI76_RS19260 at 4012.058 kb on - strand, within BWI76_RS19260 at 4012.059 kb on - strand, within BWI76_RS19260 at 4012.072 kb on + strand, within BWI76_RS19260 at 4012.108 kb on - strand, within BWI76_RS19260 at 4012.198 kb on - strand, within BWI76_RS19260 at 4012.260 kb on + strand at 4012.597 kb on - strand at 4012.755 kb on + strand, within BWI76_RS19265 at 4012.763 kb on - strand, within BWI76_RS19265 at 4012.795 kb on + strand at 4012.850 kb on - strand, within BWI76_RS19265 at 4012.944 kb on - strand, within BWI76_RS19265 at 4013.012 kb on + strand, within BWI76_RS19265 at 4013.429 kb on - strand, within BWI76_RS19265
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 4,008,564 + BWI76_RS19255 0.71 -0.1 4,008,643 + BWI76_RS19255 0.74 +0.9 4,008,815 + BWI76_RS19255 0.79 +1.3 4,009,196 - +0.4 4,009,196 - -0.9 4,009,531 - +0.2 4,009,541 - -2.3 4,009,797 + BWI76_RS19260 0.11 +1.1 4,009,856 + BWI76_RS19260 0.13 +0.8 4,009,966 - BWI76_RS19260 0.16 +0.8 4,010,021 + +0.9 4,010,422 + BWI76_RS19260 0.31 +0.4 4,010,430 - BWI76_RS19260 0.31 +0.6 4,010,509 - BWI76_RS19260 0.34 +1.2 4,010,513 + BWI76_RS19260 0.34 +1.5 4,010,599 - BWI76_RS19260 0.37 +2.1 4,010,685 + BWI76_RS19260 0.40 +1.1 4,010,704 + BWI76_RS19260 0.40 +0.4 4,011,061 - BWI76_RS19260 0.52 -1.9 4,011,383 - BWI76_RS19260 0.62 +0.3 4,011,458 - BWI76_RS19260 0.65 +0.4 4,011,553 + BWI76_RS19260 0.68 -2.3 4,011,878 + BWI76_RS19260 0.78 +0.8 4,012,058 - BWI76_RS19260 0.84 -2.9 4,012,059 - BWI76_RS19260 0.84 +1.0 4,012,072 + BWI76_RS19260 0.85 -0.4 4,012,108 - BWI76_RS19260 0.86 -0.4 4,012,198 - BWI76_RS19260 0.89 -1.5 4,012,260 + +1.1 4,012,597 - -2.9 4,012,755 + BWI76_RS19265 0.15 +0.2 4,012,763 - BWI76_RS19265 0.15 +0.1 4,012,795 + -0.1 4,012,850 - BWI76_RS19265 0.22 -1.0 4,012,944 - BWI76_RS19265 0.28 +1.8 4,013,012 + BWI76_RS19265 0.33 +0.3 4,013,429 - BWI76_RS19265 0.62 +0.8
Or see this region's nucleotide sequence