Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18575 and BWI76_RS18580 are separated by 4 nucleotides BWI76_RS18580 and BWI76_RS18585 are separated by 383 nucleotides BWI76_RS18585 and BWI76_RS18590 overlap by 1 nucleotides BWI76_RS18590 and BWI76_RS18595 are separated by 139 nucleotides
BWI76_RS18575: BWI76_RS18575 - transcriptional regulator, at 3,853,441 to 3,853,743
_RS18575
BWI76_RS18580: BWI76_RS18580 - hypothetical protein, at 3,853,748 to 3,854,101
_RS18580
BWI76_RS18585: BWI76_RS18585 - two-component sensor histidine kinase, at 3,854,485 to 3,855,903
_RS18585
BWI76_RS18590: BWI76_RS18590 - DNA-binding response regulator, at 3,855,903 to 3,856,571
_RS18590
BWI76_RS18595: BWI76_RS18595 - hypothetical protein, at 3,856,711 to 3,857,337
_RS18595
Position (kb)
3854
3855
3856 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3853.515 kb on - strand, within BWI76_RS18575 at 3853.655 kb on - strand, within BWI76_RS18575 at 3853.776 kb on - strand at 3853.805 kb on + strand, within BWI76_RS18580 at 3854.056 kb on + strand, within BWI76_RS18580 at 3854.308 kb on - strand at 3854.358 kb on + strand at 3854.490 kb on - strand at 3854.619 kb on + strand at 3854.831 kb on + strand, within BWI76_RS18585 at 3854.831 kb on + strand, within BWI76_RS18585 at 3854.839 kb on - strand, within BWI76_RS18585 at 3854.839 kb on - strand, within BWI76_RS18585 at 3854.850 kb on - strand, within BWI76_RS18585 at 3854.925 kb on - strand, within BWI76_RS18585 at 3854.934 kb on + strand, within BWI76_RS18585 at 3854.952 kb on - strand, within BWI76_RS18585 at 3855.054 kb on + strand, within BWI76_RS18585 at 3855.083 kb on + strand, within BWI76_RS18585 at 3855.337 kb on - strand, within BWI76_RS18585 at 3855.490 kb on + strand, within BWI76_RS18585 at 3855.499 kb on + strand, within BWI76_RS18585 at 3855.516 kb on - strand at 3855.758 kb on - strand, within BWI76_RS18585 at 3855.948 kb on - strand at 3856.161 kb on - strand, within BWI76_RS18590 at 3856.271 kb on - strand, within BWI76_RS18590 at 3856.325 kb on - strand, within BWI76_RS18590 at 3856.412 kb on + strand, within BWI76_RS18590 at 3856.420 kb on - strand, within BWI76_RS18590 at 3856.516 kb on - strand at 3856.517 kb on - strand at 3856.608 kb on - strand at 3856.655 kb on + strand at 3856.663 kb on - strand at 3856.663 kb on - strand at 3856.778 kb on - strand, within BWI76_RS18595 at 3856.823 kb on - strand, within BWI76_RS18595
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 3,853,515 - BWI76_RS18575 0.24 +0.8 3,853,655 - BWI76_RS18575 0.71 -0.1 3,853,776 - +0.8 3,853,805 + BWI76_RS18580 0.16 -0.5 3,854,056 + BWI76_RS18580 0.87 +0.6 3,854,308 - +2.0 3,854,358 + -0.7 3,854,490 - +0.7 3,854,619 + +1.3 3,854,831 + BWI76_RS18585 0.24 -2.1 3,854,831 + BWI76_RS18585 0.24 -2.7 3,854,839 - BWI76_RS18585 0.25 +0.2 3,854,839 - BWI76_RS18585 0.25 +1.7 3,854,850 - BWI76_RS18585 0.26 +2.4 3,854,925 - BWI76_RS18585 0.31 +0.2 3,854,934 + BWI76_RS18585 0.32 +0.6 3,854,952 - BWI76_RS18585 0.33 -2.1 3,855,054 + BWI76_RS18585 0.40 +0.7 3,855,083 + BWI76_RS18585 0.42 +0.2 3,855,337 - BWI76_RS18585 0.60 +0.6 3,855,490 + BWI76_RS18585 0.71 +0.2 3,855,499 + BWI76_RS18585 0.71 +0.5 3,855,516 - -0.7 3,855,758 - BWI76_RS18585 0.90 +1.8 3,855,948 - +0.5 3,856,161 - BWI76_RS18590 0.39 -2.2 3,856,271 - BWI76_RS18590 0.55 +0.1 3,856,325 - BWI76_RS18590 0.63 -2.3 3,856,412 + BWI76_RS18590 0.76 -0.7 3,856,420 - BWI76_RS18590 0.77 -0.9 3,856,516 - +0.9 3,856,517 - +0.5 3,856,608 - -2.7 3,856,655 + +0.7 3,856,663 - +0.1 3,856,663 - +0.3 3,856,778 - BWI76_RS18595 0.11 +0.9 3,856,823 - BWI76_RS18595 0.18 -0.4
Or see this region's nucleotide sequence