Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18515

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18510 and BWI76_RS18515 overlap by 1 nucleotidesBWI76_RS18515 and BWI76_RS18520 overlap by 4 nucleotides BWI76_RS18510: BWI76_RS18510 - membrane protein, at 3,839,402 to 3,840,487 _RS18510 BWI76_RS18515: BWI76_RS18515 - multidrug transporter AcrB, at 3,840,487 to 3,843,549 _RS18515 BWI76_RS18520: BWI76_RS18520 - hypothetical protein, at 3,843,546 to 3,844,511 _RS18520 Position (kb) 3840 3841 3842 3843 3844Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3839.501 kb on + strandat 3839.502 kb on - strandat 3839.526 kb on + strand, within BWI76_RS18510at 3839.526 kb on + strand, within BWI76_RS18510at 3839.567 kb on - strand, within BWI76_RS18510at 3839.670 kb on - strand, within BWI76_RS18510at 3839.678 kb on + strand, within BWI76_RS18510at 3839.812 kb on + strand, within BWI76_RS18510at 3839.909 kb on + strand, within BWI76_RS18510at 3839.942 kb on + strand, within BWI76_RS18510at 3839.972 kb on + strand, within BWI76_RS18510at 3840.303 kb on - strand, within BWI76_RS18510at 3840.305 kb on + strand, within BWI76_RS18510at 3840.313 kb on - strand, within BWI76_RS18510at 3840.324 kb on + strand, within BWI76_RS18510at 3840.361 kb on + strand, within BWI76_RS18510at 3840.399 kb on + strandat 3840.579 kb on - strandat 3840.728 kb on + strandat 3840.731 kb on - strandat 3840.949 kb on - strand, within BWI76_RS18515at 3840.949 kb on - strand, within BWI76_RS18515at 3841.128 kb on + strand, within BWI76_RS18515at 3841.335 kb on + strand, within BWI76_RS18515at 3841.545 kb on + strand, within BWI76_RS18515at 3841.695 kb on + strand, within BWI76_RS18515at 3841.739 kb on + strand, within BWI76_RS18515at 3841.739 kb on + strand, within BWI76_RS18515at 3841.794 kb on + strand, within BWI76_RS18515at 3841.997 kb on - strand, within BWI76_RS18515at 3842.255 kb on + strand, within BWI76_RS18515at 3842.279 kb on + strand, within BWI76_RS18515at 3842.284 kb on + strand, within BWI76_RS18515at 3842.284 kb on + strand, within BWI76_RS18515at 3842.504 kb on - strand, within BWI76_RS18515at 3842.805 kb on + strand, within BWI76_RS18515at 3842.965 kb on + strand, within BWI76_RS18515at 3843.543 kb on + strandat 3843.726 kb on - strandat 3843.820 kb on + strand, within BWI76_RS18520at 3843.848 kb on + strand, within BWI76_RS18520at 3843.902 kb on - strand, within BWI76_RS18520at 3843.909 kb on + strand, within BWI76_RS18520at 3843.909 kb on + strand, within BWI76_RS18520at 3843.939 kb on + strand, within BWI76_RS18520at 3844.028 kb on - strand, within BWI76_RS18520at 3844.028 kb on - strand, within BWI76_RS18520at 3844.075 kb on - strand, within BWI76_RS18520at 3844.105 kb on - strand, within BWI76_RS18520at 3844.115 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.193 kb on + strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strandat 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.201 kb on - strand, within BWI76_RS18520at 3844.259 kb on + strand, within BWI76_RS18520at 3844.259 kb on + strand, within BWI76_RS18520at 3844.387 kb on + strand, within BWI76_RS18520at 3844.395 kb on - strand, within BWI76_RS18520at 3844.395 kb on - strand, within BWI76_RS18520at 3844.544 kb on - strandat 3844.546 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
remove
3,839,501 + -1.9
3,839,502 - -2.6
3,839,526 + BWI76_RS18510 0.11 +0.0
3,839,526 + BWI76_RS18510 0.11 -1.4
3,839,567 - BWI76_RS18510 0.15 +1.3
3,839,670 - BWI76_RS18510 0.25 -0.1
3,839,678 + BWI76_RS18510 0.25 -2.7
3,839,812 + BWI76_RS18510 0.38 +0.7
3,839,909 + BWI76_RS18510 0.47 +0.5
3,839,942 + BWI76_RS18510 0.50 +1.1
3,839,972 + BWI76_RS18510 0.52 +0.3
3,840,303 - BWI76_RS18510 0.83 +0.3
3,840,305 + BWI76_RS18510 0.83 +1.1
3,840,313 - BWI76_RS18510 0.84 +2.1
3,840,324 + BWI76_RS18510 0.85 -0.1
3,840,361 + BWI76_RS18510 0.88 +0.2
3,840,399 + +0.4
3,840,579 - -2.4
3,840,728 + -0.3
3,840,731 - -2.0
3,840,949 - BWI76_RS18515 0.15 -3.9
3,840,949 - BWI76_RS18515 0.15 +0.8
3,841,128 + BWI76_RS18515 0.21 -1.4
3,841,335 + BWI76_RS18515 0.28 -0.0
3,841,545 + BWI76_RS18515 0.35 -1.4
3,841,695 + BWI76_RS18515 0.39 +2.0
3,841,739 + BWI76_RS18515 0.41 -0.9
3,841,739 + BWI76_RS18515 0.41 -1.1
3,841,794 + BWI76_RS18515 0.43 -3.4
3,841,997 - BWI76_RS18515 0.49 -0.5
3,842,255 + BWI76_RS18515 0.58 +0.6
3,842,279 + BWI76_RS18515 0.59 -3.1
3,842,284 + BWI76_RS18515 0.59 -0.7
3,842,284 + BWI76_RS18515 0.59 -0.3
3,842,504 - BWI76_RS18515 0.66 +0.8
3,842,805 + BWI76_RS18515 0.76 +0.6
3,842,965 + BWI76_RS18515 0.81 -0.8
3,843,543 + -0.1
3,843,726 - -0.7
3,843,820 + BWI76_RS18520 0.28 -0.1
3,843,848 + BWI76_RS18520 0.31 -2.1
3,843,902 - BWI76_RS18520 0.37 -2.6
3,843,909 + BWI76_RS18520 0.38 +0.5
3,843,909 + BWI76_RS18520 0.38 -1.4
3,843,939 + BWI76_RS18520 0.41 +1.0
3,844,028 - BWI76_RS18520 0.50 -0.0
3,844,028 - BWI76_RS18520 0.50 +1.3
3,844,075 - BWI76_RS18520 0.55 -0.6
3,844,105 - BWI76_RS18520 0.58 +0.2
3,844,115 + BWI76_RS18520 0.59 -0.5
3,844,193 + BWI76_RS18520 0.67 -0.1
3,844,193 + BWI76_RS18520 0.67 -1.9
3,844,193 + BWI76_RS18520 0.67 +0.2
3,844,193 + BWI76_RS18520 0.67 +0.7
3,844,193 + BWI76_RS18520 0.67 -0.3
3,844,193 + BWI76_RS18520 0.67 +0.7
3,844,193 + BWI76_RS18520 0.67 +0.3
3,844,193 + BWI76_RS18520 0.67 +0.1
3,844,193 + BWI76_RS18520 0.67 +0.0
3,844,193 + BWI76_RS18520 0.67 -0.6
3,844,193 + BWI76_RS18520 0.67 +4.3
3,844,193 + BWI76_RS18520 0.67 +0.6
3,844,193 + BWI76_RS18520 0.67 -1.7
3,844,193 + BWI76_RS18520 0.67 -1.7
3,844,201 - BWI76_RS18520 0.68 -1.2
3,844,201 - BWI76_RS18520 0.68 -0.9
3,844,201 - BWI76_RS18520 0.68 -0.1
3,844,201 - BWI76_RS18520 0.68 -1.0
3,844,201 - +0.9
3,844,201 - BWI76_RS18520 0.68 +1.0
3,844,201 - BWI76_RS18520 0.68 +1.1
3,844,201 - BWI76_RS18520 0.68 -3.1
3,844,201 - BWI76_RS18520 0.68 +0.4
3,844,201 - BWI76_RS18520 0.68 -0.1
3,844,201 - BWI76_RS18520 0.68 -0.2
3,844,201 - BWI76_RS18520 0.68 +0.8
3,844,259 + BWI76_RS18520 0.74 -0.1
3,844,259 + BWI76_RS18520 0.74 -0.1
3,844,387 + BWI76_RS18520 0.87 +1.7
3,844,395 - BWI76_RS18520 0.88 -0.7
3,844,395 - BWI76_RS18520 0.88 +0.7
3,844,544 - +0.1
3,844,546 + -0.0

Or see this region's nucleotide sequence