Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14700

Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
3,085,975	+		BWI76_RS14695	0.68	+0.8
3,086,111	+		BWI76_RS14695	0.73	+0.8
3,086,238	-		BWI76_RS14695	0.78	-3.1
3,086,316	-		BWI76_RS14695	0.81	-1.8
3,086,335	-		BWI76_RS14695	0.82	-0.6
3,086,457	+		BWI76_RS14695	0.87	-0.1
3,086,465	-		BWI76_RS14695	0.87	-0.0
3,086,465	-		BWI76_RS14695	0.87	-1.5
3,086,465	-		BWI76_RS14695	0.87	-0.1
3,086,485	+				-0.7
3,086,493	-		BWI76_RS14695	0.88	-1.5
3,086,498	-		BWI76_RS14695	0.89	-1.4
3,086,498	-		BWI76_RS14695	0.89	-0.2
3,086,501	+		BWI76_RS14695	0.89	-0.1
3,086,502	+				-1.7
3,086,504	+		BWI76_RS14695	0.89	-1.1
3,086,509	-		BWI76_RS14695	0.89	-2.5
3,086,509	-		BWI76_RS14695	0.89	-0.6
3,086,509	-		BWI76_RS14695	0.89	-1.7
3,086,509	-		BWI76_RS14695	0.89	-0.7
3,086,527	-		BWI76_RS14695	0.90	-2.0
3,086,544	+				-0.1
3,086,552	-				-0.5
3,086,552	-				-0.7
3,086,552	-				-2.3
3,086,552	-				-0.7
3,086,552	-				-1.7
3,086,552	-				+0.8
3,086,586	-				-1.2
3,086,586	-				+3.7
3,086,586	-				+0.2
3,086,592	-				+1.5
3,086,596	-				-1.1
3,086,598	-				-1.1
3,086,606	-				-3.1
3,086,654	-				+0.9
3,086,704	+				-0.7
3,086,761	-				-1.2
3,086,761	-				+1.6
3,086,893	-				-2.1
3,086,941	-				-1.1
3,086,941	-				-3.1
3,086,945	-				+0.9
3,087,053	-				-0.1
3,087,078	-		BWI76_RS14700	0.34	+0.9
3,087,078	-		BWI76_RS14700	0.34	-0.7
3,087,078	-		BWI76_RS14700	0.34	+0.6
3,087,078	-		BWI76_RS14700	0.34	-3.1
3,087,085	-		BWI76_RS14700	0.36	-1.7
3,087,192	-		BWI76_RS14700	0.56	-2.0
3,087,277	-		BWI76_RS14700	0.72	+0.4
3,087,284	+		BWI76_RS14700	0.73	-2.5
3,087,298	+		BWI76_RS14700	0.76	-0.7
3,087,303	+				+0.5
3,087,338	+		BWI76_RS14700	0.83	+0.9
3,087,338	+		BWI76_RS14700	0.83	-0.7
3,087,344	+		BWI76_RS14700	0.84	-0.8
3,087,345	+		BWI76_RS14700	0.84	+1.3
3,087,345	+		BWI76_RS14700	0.84	+1.9
3,087,345	+		BWI76_RS14700	0.84	-0.0
3,087,345	+		BWI76_RS14700	0.84	+0.9
3,087,345	+		BWI76_RS14700	0.84	+0.2
3,087,345	+		BWI76_RS14700	0.84	-0.1
3,087,345	+		BWI76_RS14700	0.84	+1.9
3,087,345	+		BWI76_RS14700	0.84	-0.4
3,087,345	+		BWI76_RS14700	0.84	-2.1
3,087,345	+		BWI76_RS14700	0.84	+0.3
3,087,345	+		BWI76_RS14700	0.84	-0.1
3,087,345	+		BWI76_RS14700	0.84	-1.5
3,087,345	+		BWI76_RS14700	0.84	-3.1
3,087,345	+		BWI76_RS14700	0.84	-2.5
3,087,345	+		BWI76_RS14700	0.84	-0.1
3,087,345	+		BWI76_RS14700	0.84	-0.5
3,087,345	+		BWI76_RS14700	0.84	+0.7
3,087,345	+		BWI76_RS14700	0.84	-2.0
3,087,345	+		BWI76_RS14700	0.84	-2.0
3,087,345	+				+0.5
3,087,345	+		BWI76_RS14700	0.84	+1.0
3,087,345	+		BWI76_RS14700	0.84	+4.3
3,087,345	+		BWI76_RS14700	0.84	+0.3
3,087,345	+		BWI76_RS14700	0.84	+0.9
3,087,345	+		BWI76_RS14700	0.84	+2.4
3,087,345	+		BWI76_RS14700	0.84	-0.1
3,087,350	+		BWI76_RS14700	0.85	+0.5
3,087,350	+		BWI76_RS14700	0.85	+1.2
3,087,350	+		BWI76_RS14700	0.85	+1.3
3,087,350	+				+0.9
3,087,350	+		BWI76_RS14700	0.85	-0.7
3,087,353	-		BWI76_RS14700	0.86	-2.7
3,087,353	-				-0.1
3,087,353	-		BWI76_RS14700	0.86	+1.8
3,087,353	-		BWI76_RS14700	0.86	+0.3
3,087,353	-		BWI76_RS14700	0.86	-3.0
3,087,353	-		BWI76_RS14700	0.86	+0.9
3,087,355	+		BWI76_RS14700	0.86	+0.6
3,087,355	+		BWI76_RS14700	0.86	-2.1
3,087,355	+				+0.9
3,087,355	+		BWI76_RS14700	0.86	-2.5
3,087,355	+		BWI76_RS14700	0.86	+1.9
3,087,358	-		BWI76_RS14700	0.87	+0.5
3,087,358	-				+0.9
3,087,363	-		BWI76_RS14700	0.88	-0.7
3,087,364	+		BWI76_RS14700	0.88	-2.0
3,087,437	+				+1.9
3,087,437	+				-0.4
3,087,486	+				-3.5
3,087,494	-				-2.2
3,087,494	-				+0.8
3,087,494	-				-3.4
3,087,494	-				+0.5
3,087,494	-				+0.1
3,087,494	-				-1.7
3,087,494	-				-3.5
3,087,494	-				+2.9
3,087,494	-				-0.8
3,087,494	-				+0.4
3,087,494	-				+1.2
3,087,494	-				-1.3
3,087,494	-				-0.5
3,087,494	-				+1.6
3,087,494	-				+1.0
3,087,494	-				+0.2
3,087,494	-				-0.4
3,087,500	-				+1.5
3,087,509	+				-1.1
3,087,517	-				-0.2
3,087,517	-				-0.5
3,087,517	-				-0.1
3,087,522	-				-2.5
3,087,524	-				-1.1
3,087,524	-				-0.8
3,087,535	-				+0.2
3,087,547	+				+0.1
3,087,550	-		BWI76_RS14705	0.10	+0.9
3,087,588	-		BWI76_RS14705	0.17	-3.0
3,087,596	-		BWI76_RS14705	0.18	-1.5
3,087,596	-		BWI76_RS14705	0.18	-1.1
3,087,605	-		BWI76_RS14705	0.20	-0.0
3,087,605	-				-0.7
3,087,633	-		BWI76_RS14705	0.25	-1.7
3,087,633	-		BWI76_RS14705	0.25	-1.5
3,087,633	-		BWI76_RS14705	0.25	-1.1
3,087,635	+		BWI76_RS14705	0.26	-1.1
3,087,639	-		BWI76_RS14705	0.26	+2.7
3,087,653	+		BWI76_RS14705	0.29	-2.3
3,087,658	+		BWI76_RS14705	0.30	-1.5
3,087,693	-		BWI76_RS14705	0.36	-2.1
3,087,762	-		BWI76_RS14705	0.49	-1.7
3,087,768	-		BWI76_RS14705	0.50	-3.7
3,087,768	-		BWI76_RS14705	0.50	-2.0
3,087,768	-		BWI76_RS14705	0.50	-2.3
3,087,768	-		BWI76_RS14705	0.50	+0.8
3,087,768	-				-0.7
3,087,825	-		BWI76_RS14705	0.60	+0.2
3,087,833	+				+0.9
3,087,841	-		BWI76_RS14705	0.63	-2.0
3,087,888	+		BWI76_RS14705	0.72	-0.7
3,087,898	-		BWI76_RS14705	0.74	-1.1
3,087,971	-		BWI76_RS14705	0.87	-2.0
3,087,972	+		BWI76_RS14705	0.87	+0.9
3,087,990	+				+0.9
3,087,997	+				-0.7
3,087,997	+				-2.0
3,087,997	+				+0.9
3,087,997	-				+0.2
3,087,997	-				-0.1
3,087,997	-				-2.1
3,088,005	-				+0.9
3,088,005	-				-1.6
3,088,005	-				-3.1
3,088,005	-				+2.2
3,088,005	-				+0.0
3,088,005	-				-0.7
3,088,007	-				-0.7
3,088,016	-				+0.9
3,088,099	-				-0.6
3,088,110	-				+1.7
3,088,271	-				+0.9
3,088,284	+				-0.5