Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14210 and BWI76_RS14215 are separated by 235 nucleotides BWI76_RS14215 and BWI76_RS14220 are separated by 21 nucleotides BWI76_RS14220 and BWI76_RS14225 are separated by 53 nucleotides
BWI76_RS14210: BWI76_RS14210 - LysR family transcriptional regulator, at 2,974,662 to 2,975,624
_RS14210
BWI76_RS14215: BWI76_RS14215 - hypothetical protein, at 2,975,860 to 2,976,141
_RS14215
BWI76_RS14220: BWI76_RS14220 - hypothetical protein, at 2,976,163 to 2,976,504
_RS14220
BWI76_RS14225: BWI76_RS14225 - anti-ECF sigma factor ChrR, at 2,976,558 to 2,977,229
_RS14225
Position (kb)
2975
2976
2977 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2974.902 kb on + strand, within BWI76_RS14210 at 2974.902 kb on + strand, within BWI76_RS14210 at 2974.904 kb on - strand, within BWI76_RS14210 at 2974.957 kb on - strand, within BWI76_RS14210 at 2974.998 kb on + strand, within BWI76_RS14210 at 2975.194 kb on + strand, within BWI76_RS14210 at 2975.275 kb on - strand, within BWI76_RS14210 at 2975.500 kb on + strand, within BWI76_RS14210 at 2975.969 kb on + strand, within BWI76_RS14215 at 2975.970 kb on - strand, within BWI76_RS14215 at 2975.998 kb on - strand, within BWI76_RS14215 at 2976.025 kb on - strand, within BWI76_RS14215 at 2976.097 kb on + strand, within BWI76_RS14215 at 2976.097 kb on + strand, within BWI76_RS14215 at 2976.110 kb on + strand, within BWI76_RS14215 at 2976.123 kb on + strand at 2976.133 kb on - strand at 2976.672 kb on + strand, within BWI76_RS14225 at 2976.680 kb on - strand, within BWI76_RS14225
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 2,974,902 + BWI76_RS14210 0.25 -1.5 2,974,902 + BWI76_RS14210 0.25 +0.2 2,974,904 - BWI76_RS14210 0.25 +0.9 2,974,957 - BWI76_RS14210 0.31 -3.0 2,974,998 + BWI76_RS14210 0.35 +0.0 2,975,194 + BWI76_RS14210 0.55 +0.7 2,975,275 - BWI76_RS14210 0.64 +0.4 2,975,500 + BWI76_RS14210 0.87 -0.3 2,975,969 + BWI76_RS14215 0.39 +1.7 2,975,970 - BWI76_RS14215 0.39 -0.4 2,975,998 - BWI76_RS14215 0.49 -1.5 2,976,025 - BWI76_RS14215 0.59 +0.8 2,976,097 + BWI76_RS14215 0.84 +1.1 2,976,097 + BWI76_RS14215 0.84 +0.2 2,976,110 + BWI76_RS14215 0.89 +1.1 2,976,123 + +0.9 2,976,133 - -0.8 2,976,672 + BWI76_RS14225 0.17 +0.7 2,976,680 - BWI76_RS14225 0.18 +0.9
Or see this region's nucleotide sequence