Experiment: RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09370 and BWI76_RS09375 are separated by 52 nucleotides BWI76_RS09375 and BWI76_RS09380 are separated by 14 nucleotides BWI76_RS09380 and BWI76_RS09385 overlap by 8 nucleotides BWI76_RS09385 and BWI76_RS09390 overlap by 4 nucleotides BWI76_RS09390 and BWI76_RS09395 overlap by 4 nucleotides
BWI76_RS09370: BWI76_RS09370 - major tail tube protein, at 1,966,670 to 1,967,185
_RS09370
BWI76_RS09375: BWI76_RS09375 - phage tail protein, at 1,967,238 to 1,967,537
_RS09375
BWI76_RS09380: BWI76_RS09380 - GpE family phage tail protein, at 1,967,552 to 1,967,671
_RS09380
BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291
_RS09385
BWI76_RS09390: BWI76_RS09390 - phage tail protein, at 1,970,288 to 1,970,773
_RS09390
BWI76_RS09395: BWI76_RS09395 - late control gene D protein, at 1,970,770 to 1,971,855
_RS09395
Position (kb) 1967
1968
1969
1970
1971 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1966.667 kb on + strand at 1966.667 kb on + strand at 1967.185 kb on + strand at 1967.347 kb on + strand, within BWI76_RS09375 at 1967.482 kb on + strand, within BWI76_RS09375 at 1967.746 kb on + strand at 1968.142 kb on - strand, within BWI76_RS09385 at 1968.321 kb on + strand, within BWI76_RS09385 at 1968.606 kb on + strand, within BWI76_RS09385 at 1968.613 kb on - strand, within BWI76_RS09385 at 1969.478 kb on - strand, within BWI76_RS09385 at 1969.623 kb on - strand, within BWI76_RS09385 at 1969.623 kb on - strand, within BWI76_RS09385 at 1969.717 kb on - strand, within BWI76_RS09385 at 1970.375 kb on + strand, within BWI76_RS09390 at 1970.560 kb on - strand, within BWI76_RS09390 at 1970.642 kb on + strand, within BWI76_RS09390 at 1970.698 kb on + strand, within BWI76_RS09390 at 1970.770 kb on - strand at 1970.812 kb on + strand at 1971.182 kb on + strand, within BWI76_RS09395 at 1971.190 kb on - strand, within BWI76_RS09395
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Mixed culture; Ralstonia sp. UNC404CL21Col 3:1 starting OD to Klebsiella and Glu_DLac_Acetate_mix 1 x remove 1,966,667 + -2.6 1,966,667 + +1.0 1,967,185 + +0.3 1,967,347 + BWI76_RS09375 0.36 +0.6 1,967,482 + BWI76_RS09375 0.81 -0.7 1,967,746 + +0.2 1,968,142 - BWI76_RS09385 0.18 +0.7 1,968,321 + BWI76_RS09385 0.25 +0.2 1,968,606 + BWI76_RS09385 0.36 +0.1 1,968,613 - BWI76_RS09385 0.36 +0.8 1,969,478 - BWI76_RS09385 0.69 -0.3 1,969,623 - BWI76_RS09385 0.75 +0.5 1,969,623 - BWI76_RS09385 0.75 +0.3 1,969,717 - BWI76_RS09385 0.78 -0.7 1,970,375 + BWI76_RS09390 0.18 +0.1 1,970,560 - BWI76_RS09390 0.56 -2.7 1,970,642 + BWI76_RS09390 0.73 -1.6 1,970,698 + BWI76_RS09390 0.84 -0.4 1,970,770 - +2.0 1,970,812 + +1.7 1,971,182 + BWI76_RS09395 0.38 -1.2 1,971,190 - BWI76_RS09395 0.39 +0.9
Or see this region's nucleotide sequence